Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq14927 244 2e-60 seq785 203 7e-48 >seq14927 Length=58641 Score = 244 bits (270), Expect = 2e-60 Identities = 763/1163 (66%), Gaps = 39/1163 (3%) Strand=Plus/Minus Query 25509 GACTATCACCACGGCGTAACCGTCGTCGAAGATAACACCGGCGTCCGTCCGATCACCACG 25568 || ||||| ||||||||| || || ||| ||| |||| ||| || |||| Sbjct 29667 GATTATCATCACGGCGTACGAGTTGTTGAAATCAACGACGGCACCCGCGTTATTTCCACC 29608 Query 25569 ATCTCGACGGCCGTTATCGGTGTCGTCTGTACCGGCGACGATGCCGAC-CCGATCACGTT 25627 | || || ||| | ||||| | ||||| |||| || ||||| ||| |||| | |||| Sbjct 29607 GTTTCCACCGCCATCATCGGGATGGTCTGCACCGCAGAAGATGCGGACGCCGA-CGCGTT 29549 Query 25628 CCCGCTGAACAAGCCGGTGCTGCTCACGAACGTGCAGGCCGCGCTCGGCAAGGCGGGCCG 25687 |||||| | | ||||||||| |||| ||||| | | |||| ||||||||||| Sbjct 29548 CCCGCTCGATACGCCGGTGCTTATCACCAACGTACTGACCGCCGCAGGCAAGGCGGGTAA 29489 Query 25688 AAAGGGCACGCTGTACACGACGCTCGATG-CGATCCAGAAACAGGCCCGCCCGTACACCG 25746 || |||||||| | | | || |||| | ||| || ||||| ||| || Sbjct 29488 AACCGGCACGCTCCGCGCCTCCCT-GATGGCAATCGCCAACCAGGCTAAACCGGTTGTCG 29430 Query 25747 TCGTGGTGCGCGTCCCGCAAGGCAAGGATTCG--GCGGAAACCACGTCGAACATTGTCGG 25804 |||| || |||||| | | || | | || ||| ||||||| || ||||| |||| Sbjct 29429 TCGTTGTTCGCGTCGCAGAGGGTGA--AACCGACGCGCAAACCACCTCAAACATCATCGG 29372 Query 25805 CACCGTGAATGCCGACGGCACGAAAACCGGGCTCAAGGCGCTCGAATCGGCGCCGTCCGT 25864 | | | | ||||| | | ||||| | || || || || |||| | | Sbjct 29371 CGGTTCGGACGAAACCGGCATGTATACCGGCATGAAAGCCCTGCTGTCTGCGCAAACTGA 29312 Query 25865 GGTGCAGGTGAAGCCGCGGATTCTGGCGGTTCCGGGGCTCGATACGCAGCCCGTCGCGAA 25924 | || |||||||| ||||| | || |||||||| |||| ||| ||||| | Sbjct 29311 ACTCGGCGTAAAGCCGCGCATTCTCGGCGTGCCGGGGCTTGATAATCAGGAAGTCGCTAC 29252 Query 25925 CGCGCTGGCATCCACCGGGCAACTGCTGCGTGCGATGGCGTACGTCGCGGCTCGCAACGA 25984 ||||| || || | | || | ||| || || | | |||||| || || | | Sbjct 29251 GGCGCTCGCCGCCGTCTGTCAGCAGCTCCGCGCCTTTGGCTACGTCA--GCGCGTACGG- 29195 Query 25985 GACGGGGGAACTG-GTCGCCACGC-AGGAAGAGGCGGTGGCCTACCGGAAGAAGTTCGGT 26042 | | ||| | ||| | | || | ||| ||||| | || ||| | Sbjct 29194 --CTGCAAAACCGTGTC-CGATGCCATCAAG-----------TACCGCGACAATTTCAGC 29149 Query 26043 CAACGCGAAGTGATGGTGATCTGGCCGGATTTCGTCGCATGGGACGACGCCGCGTCGAAA 26102 || || || ||||||| ||||||| |||||||| | ||| || | || | || Sbjct 29148 CAGCGTGAGCTGATGGTTGTCTGGCCTGATTTCGTGTCCTGGAACACCACCACC---AAT 29092 Query 26103 G--AG-GTTGAAGTGCCCGCCGTAGCGTATGCGGTCGGCCTGCGCGCGAAGATCGATCAA 26159 | || | | | ||||||| || || ||| |||||||||| || || ||||| | Sbjct 29091 GCCAGCGATATCGCGCCCGCCACCGCTTACGCGCTCGGCCTGCGTGCCAAAATCGACGCA 29032 Query 26160 CAAACCGGCTGGCATAAGACGCTCTCGAACGTCGCTGTGAATGGCGTCGAAGGGAT--CA 26217 |||||||||||||||| ||||| |||||||| | | || |||||| || | | Sbjct 29031 GAAACCGGCTGGCATAAAACGCTTTCGAACGTTGGGATCAACGGCGTCACCGGCCTGTCT 28972 Query 26218 GCAAGCCGGTTTCGTGGGATTTGCAGAAC-CCGGCGACCGATGCGGGTTTCCTCAACGAG 26276 || ||| || | ||||||||||||| | ||||| |||||||| | | || ||| || Sbjct 28971 GCCAGC--GTGTACTGGGATTTGCAGACCACCGGC-ACCGATGCCGACCTGCTGAACCAG 28915 Query 26277 AATCAGGTCACGACGCTGATCAACCGGAACGGCTTCCGATTCTGGGGCTCGCGCACGGCG 26336 || || ||||| ||| | ||||||| |||||||| |||||| Sbjct 28914 GCGTGCGTGACCACGCTTATCCGCAAAGACGGCTTTAAGTTCTGGGGGCAGCGCACCTGC 28855 Query 26337 TCCGACGATCCGCTGTTCGCGTTCGAAAACTACACGCGCACGGCGCAGGTGCTGGCCGAT 26396 || || |||||||||||| ||| || ||||| || ||||| |||||||||||||| || Sbjct 28854 TCTGATGATCCGCTGTTCCTGTTTGAGAACTATACCCGCACCGCGCAGGTGCTGGCGGAC 28795 Query 26397 ACGATGGCCGAAGCACAGATGGTCGTTATCGACGGCGCGATGATTCCGGCGCTACCGCGC 26456 || ||||| ||||| || || | || ||| | | |||| ||| |||| Sbjct 28794 ACCATGGCAGAAGCGCACCTGTGGGCGATGGACAGGCCAATGACCCCGACGCTTATCAAA 28735 Query 26457 GACGTGATCGAGGGCATCAACGCAAAAATGCGTGAAATGAAAACCAAGGGCCAGTTGATC 26516 ||| |||| | |||||| ||||| || |||| ||||||||| | || | | | || Sbjct 28734 GACATGATTGCGGGCATTAACGCCAAGCTGCGCGAAATGAAATCTGCCGGTCTGATCATT 28675 Query 26517 GGCGGCTCGGCGTGGTTCGACGCGGAACAGAACGGCGTTGTGGCGCTGAAAGATGGCAAA 26576 | || | |||| |||| | ||| |||| ||| | | ||||||| ||||| Sbjct 28674 GATGGTACCTGCTGGTACGACCCCGAAGCGAACACCGTCGACACCCTGAAAGCGGGCAAG 28615 Query 26577 GCGGTGATCAATTACGACTACACGCCGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAG 26636 | | || |||| ||||| ||||||||||| ||||||||| | | || ||||| ||| Sbjct 28614 CTGTTCATTGATTATGACTATACGCCGGTGCCGCCGCTGGAAGATTTAACCCTGCGTCAG 28555 Query 26637 AAGATCACCGACCAGTATCTGGC 26659 |||||||| ||||| ||||| Sbjct 28554 CGCATCACCGATCAGTACCTGGC 28532 Score = 127 bits (140), Expect = 5e-25 Identities = 362/548 (66%), Gaps = 19/548 (3%) Strand=Plus/Minus Query 11074 GCATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTGCA 11133 |||||||| |||||||| |||||||| || ||||||||||| | |||| || Sbjct 43486 GCATCCTCAATGGTGACGATTTGCCGCCACTGTCCGTCGCCGCAAAGCTGCCCTTTCGCC 43427 Query 11134 AGCGACGT-ATGGGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCG------ 11186 || | ||| |||| || || | ||| | | ||| | | || || || Sbjct 43426 AGGG-CGTGATGGCTGATATCCAGCTCAATCCT---GTCATTGCGATCTTCCCGTCCCTT 43371 Query 11187 GTTGAAGTCCGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGA 11246 |||||| | || | ||| |||| ||| || |||||||| || || || || || Sbjct 43370 GTTGAACAGTTCTCCTGACCAGAACGGATACGCGCCGTGCGTCAGTGCTGACGGGGTGGA 43311 Query 11247 GAAGTGCGTCATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAG-TT 11305 ||| | || | |||| ||| |||| |||||| || | || |||||| ||| || Sbjct 43310 GAAATAGGTGGTGCGCAGATGTTCCTGCGACGCCATGCCGCTGGCAACCTTGCGCAGCTT 43251 Query 11306 CGGCAAACTTGCTGACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGG 11365 | | ||| | | || ||| || || || | ||||||||||| || | |||||||| Sbjct 43250 CTGGAAATTCGG-GATCCAAAAGATTTCGTCCACGTACAGGTCGCCATTATGGCTTTGGG 43192 Query 11366 CCGTGCGTGAACTGGTGCCGAGAAAAATCAATTCCGCACCGT--TCGACAACCGC-ATCG 11422 | ||| || ||||||| | ||||||| | || |||| | | | | | | |||| Sbjct 43191 CGGTGTTGGAGTTGGTGCCTAAGAAAATCAGCTTTGCGCCGTTGTTGCCGATCACAATCG 43132 Query 11423 GATCGCCGGTTAGCTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGA 11482 | || || || |||||||| | || | | | ||||| | ||| || || | Sbjct 43131 GGTCACCCGTCAGCTCAACAT---CAACCTGGCGGGCAAACTGAATGATGTATTCACGAA 43075 Query 11483 ACACGTGTGCCTGTGCGCGGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCG 11542 |||||| ||||| | || || ||||| |||||||| || |||||| | || | Sbjct 43074 ACACGTAAGCCTGAGTTTTACTGGCTGACAGGAAAATCTGGTTATGGCCGGTCGCTAGGG 43015 Query 11543 CGCGCACGAGTGCCTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGA 11602 |||||| || || ||| | || || ||||||| |||||||| ||||| || || || | Sbjct 43014 CGCGCAGCAGAGCTTCGCGGGCAAAGAAGAACGTCGCGCCGATTTGTCGCGATTTGAGAA 42955 Query 11603 TGTTGCGG 11610 ||| |||| Sbjct 42954 TGTCGCGG 42947 >seq785 Length=396209 Score = 203 bits (224), Expect = 7e-48 Identities = 436/638 (68%), Gaps = 28/638 (4%) Strand=Plus/Minus Query 26025 TACCGGAAGAAGTTCGGTCAACGCGAAGTGATGGTGATCTGGCCGGATTTCGTCGCATGG 26084 ||||| |||| ||| |||| |||||| ||||| ||||||||||||| || || ||| Sbjct 375518 TACCGCGAGAACTTCAGTCAGCGCGAACTGATGCTGATCTGGCCGGACTTTGTTAACTGG 375459 Query 26085 GACGACGCCGC------GTCGAAAGAGGTTGAAGTGCCCGCCGTAGCGTATGCGGTCGGC 26138 | |||| | |||| | | | | | |||| | ||| | | ||| Sbjct 375458 AATACCGCCACCAGCCAGTCGGATATCGCTTATGCCACCGC--TCGCG----CTCTGGGC 375405 Query 26139 CTGCGCGCGAAGATCGATCAACAAACCGGCTGGCATAAGACGCTCTCGAACGTCGCTGTG 26198 | ||||| || ||||| || |||||||||||||||| || || || ||||||| ||| Sbjct 375404 TTACGCGCCAAAATCGACCAGGAAACCGGCTGGCATAAAACCCTGTCAAACGTCGGCGTG 375345 Query 26199 AATGGCGTCGAAGGGA---TCAGCAAGCCGGTTTCGTGGGATTTGCAGAAC-CCGGCGAC 26254 || || || || || ||||| ||| || | |||||||||||| ||||| || Sbjct 375344 AACGGGGT-GACCGGCCTTTCAGCCAGC--GTCTTCTGGGATTTGCAGGCGACCGGC-AC 375289 Query 26255 CGATGCGGGTTTCCTCAACGAGAATCAG-GTCACGACGCTGATCAACCGGAACGGCTTCC 26313 || || | | | || ||||| | | | ||||| |||||| | | ||||||||| Sbjct 375288 TGACGCCGATCTGCTGAACGA-AGCCTGTGTCACCACGCTGGTTCGCAAAGACGGCTTCC 375230 Query 26314 GATTCTGGGGCTCGCGCACGGCGTCCGACGATCCGCTGTTCGCGTTCGAAAACTACACGC 26373 | ||||||||| || || ||| || || ||||| ||| ||||||||||| | Sbjct 375229 GTTTCTGGGGCAACCGTACCTGCAGCGATGACACGTTGTTCCTGTTTGAAAACTACACCC 375170 Query 26374 GCACGGCGCAGGTGCTGGCCGATACGATGGCCGAAGCACAGATGGTCGTTATCGACGGCG 26433 | || ||||| |||||||||||||| ||||| ||||| || ||| | |||| Sbjct 375169 GTACCGCGCAAGTGCTGGCCGATACCATGGCTGAAGCGCATATGTGGGCGGTCGATAAAC 375110 Query 26434 CGATGATTCCGGCGCTACCGCGCGACGTGATCGAGGGCATCAACGCAAAAATGCGTGAAA 26493 | |||| || | || |||||| ||||||| |||||||| || |||||||| |||| Sbjct 375109 CAATGACGCCCTCACTGGTTCGCGACATGATCGACGGCATCAAAGCCAAAATGCGCGAAA 375050 Query 26494 TGAAAACCAAGGGCCAGTTGATCGGCGG-CTCGGCGTGGTTCGACGCGGAACAG--AACG 26550 ||||| | ||| | | || | ||| | || |||| ||| || ||| | ||| Sbjct 375049 TGAAATCAGCGGGTTACATCATTGACGGTGACTGC-TGGTACGA--CGAAACCGCAAACA 374993 Query 26551 GCGTTGTGGCGCTGAAAGATGGCAAAGCGGTGATCAATTACGACTACACGCCGGTGCCCC 26610 | | | ||||||| |||||| | ||| ||||||||||||| ||||| || | Sbjct 374992 CAGCGGAAACCCTGAAAGCCGGCAAACTGTATATCGATTACGACTACACCCCGGTTCCTC 374933 Query 26611 CGCTGGAAAACCTCACGCTGCGCCAGAAGATCACCGAC 26648 | |||||| | || || ||||||||| ||||||||| Sbjct 374932 CACTGGAAGATCTGACCCTGCGCCAGCGTATCACCGAC 374895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113161825428736