Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq785 224 1e-53 seq35 93.3 5e-14 >seq785 Length=396209 Score = 224 bits (248), Expect = 1e-53 Identities = 1029/1599 (64%), Gaps = 91/1599 (6%) Strand=Plus/Minus Query 152270 CAACGAGAACGCGAACAAAGAT-GCAAGGGTATTCCCGACACAGCGCGATTTGCTGGCGG 152328 ||||||||| || |||||||| |||| | || |||||| ||||| || ||||||||| Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAGTGAT-CCCGACCCAGCGTGACCTGCTGGCGG 143096 Query 152329 GTATCGTAGCGAAGCATTTCGCCCGTAATCATATCCTCCCGAAACATATCGTAGAAGCGC 152388 |||| || || ||||||| |||| | ||||| | ||| || |||| |||| Sbjct 143095 GTATTGTCGCCAAGCATTACGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCGC 143036 Query 152389 ATGATTCCGGTGACATCCACTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTA 152448 |||| || || ||||| ||||| || || || ||| ||||||| ||| || Sbjct 143035 ATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTA 142976 Query 152449 ACTGCTGTCTGGTTGACCTGAAAGGTATGCTGGAGAACGGTTTTAAAATGGGTAACGCGG 152508 ||||| ||| | ||||| ||||| ||| || | ||||||| ||||||||||| |||| Sbjct 142975 ACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCGG 142916 Query 152509 ACATTGAACCGCCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCAC 152568 | ||||| |||| || || || || || || ||| |||||||| | ||| | Sbjct 142915 AAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCGC 142856 Query 152569 AGATTGCCTCTCACCAGTACGGCGGGACAACCTTTGCGAACGTGGATAAAGTGCTGGCTC 152628 || | ||| || |||||||| || ||| || | | || |||| ||||| | Sbjct 142855 AGGTCGCCAGCCATATTTACGGCGGCACGACCATTAACCGCATCGACGAAGTACTGGCGC 142796 Query 152629 CATACGTCGAAATGACA--TTCTTCAAACATCTGCACGATGCTGAACATTACGGTATCGA 152686 | | |||| | | || ||| ||||||| || ||| ||| | | || Sbjct 142795 CGTTCGTC--ACCGCCAGCTTCAATAAACATCGTCAGACTGCCGAAGAGT--GG------ 142746 Query 152687 ACACTATAATGATTATGTGTATGCGATTG--AAAAG----ACTGAAAAAGA-TGTGTATG 152739 | | || ||| | ||| ||| | || || |||||||| ||| |||| Sbjct 142745 ----CAGATTGCAGATGCGGATGGCTTTGCTCACAGCCGTACCGAAAAAGAGTGT-TATG 142691 Query 152740 ATGCGTTCCAGTCCTATGAGTATGAAGTAAACACCCTACATACTGCCAACGGACAAACCC 152799 | || |||||||| || ||||| || || || || || || |||||||| || || | Sbjct 142690 ACGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGC 142631 Query 152800 CGTTTGTTACCATCACTTTCGGTACTGGTACGAGCGATTATGAA---CGCATGATCCAGA 152856 ||||||| ||| || ||| || || || | | | ||| ||| |||||||| Sbjct 142630 CGTTTGTCACCTTCGGTTTTGGCCTCGGCAC-ATC--CTGGGAATCGCGCCTGATCCAGC 142574 Query 152857 AAGCGATCCTGAAAAACCGTATTCGCGGCCTTGGTAAAGAGGGTATTACTCCGGTATTCC 152916 || | || ||| ||||| ||| ||| || || ||| | | | || | ||||||| Sbjct 142573 AATCAATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCC 142514 Query 152917 CGAAACTGGTTATGTTCATGGAAAAAGGAATTAACCTTGATCCAGAGGATCAAAACTATG 152976 | |||||||| | ||| | || | || | | | | | || ||||| | Sbjct 142513 CAAAACTGGTGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAACTACG 142454 Query 152977 ACATCAAACAACTTGCCCTGGAATGTGCTTCGAAACGCATGTACCCAGATATC----ATT 153032 ||||||| ||||| || |||||||| || || || |||||||| || ||| ||| Sbjct 142453 ACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAATT 142394 Query 153033 A-GCGCATCTAATAACCGCCGTATCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTG 153091 | | || | | | | |||| |||| ||||| | | || ||||| || Sbjct 142393 ATGATCAGGTGGTGAAAG-----TCACAGGTT----CGTTC--AAAACGCCGATGGGCTG 142345 Query 153092 TCGCAGTTTCCTTAGCGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAA 153151 ||||||||||| |||||| |||| || || || | || | || || || || Sbjct 142344 CCGCAGTTTCCTGGGCGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCCGCAA 142288 Query 153152 TAACCTTGGTGTGGTGACAATCAACCTCCCGCGCATTGCGATCGAAGCTGAAGCACAGGA 153211 ||| | || ||| | | | || || ||||| |||||| | ||||| ||| | | Sbjct 142287 TAATATCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAGC-GAACCGC---- 142233 Query 153212 AGATGAAGACGCACACGACGCATTCTGGCGCA-TCCTTGATGAACGTCTGGATCTGTGCT 153270 || |||| || || |||||| ||| | || || || ||| || ||| || Sbjct 142232 -GACGAAG-CG--------GCGTTCTGG-GCACTGCTCGACGAGCGTTTGCTGCTG-GCG 142185 Query 153271 TTG-AAGCCCTGATGACTCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTTGCGCCG 153329 | |||| |||||||| || || | | | || || | |||||| | || ||||| Sbjct 142184 AAGAAAGCGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCGCCA 142125 Query 153330 ATCCTGTACACAGAAGGTGCTTTTGGTGTCCGACTGAAACCGGATGATGA-AATTCTGGA 153388 |||||||||| |||||||| | ||||| || |||||| | || || || | ||| || Sbjct 142124 ATCCTGTACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCCGGC 142065 Query 153389 ACTGTTCAAAAATGGGCGTAGCTCTATCAGCCTTGGTTATATCGGACTACATGAAACACT 153448 | | ||||||||||| ||| ||| || || || || || || | |||||| || Sbjct 142064 A-TCTTCAAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAA--ACC 142008 Query 153449 GTTGATGTTCGGATCTG-GACAACACCCATTCGATCGGGTTGGCTCCCAGAATTTCGGTA 153507 || | | | | || | || | ||||| | || | | | |||| || || | Sbjct 142007 ATTAACGCGCTGTTCGGCAACCAGACCCACGTGTTC--GACGCCGGCCAG--TTACGCGA 141952 Query 153508 AACA--------TGTTCTGGAACACCTGAAAAACAAAACCGAACGTTGGAAAGCCCAAAC 153559 || | || ||| | |||||| ||||||| | ||||||| | |||| Sbjct 141951 AAAAGCCGAGGCGATTGTGGCTCGTCTGAAAGCGGCAACCGAAAGCTGGAAAGACGAAAC 141892 Query 153560 AGGCTTTGGATTCAGCCTGTATTCAACCCCTGCTGAATCTCTCTGTCACCGTTTCTGCAA 153619 |||| || ||||||||||| || || ||| || || |||| ||||| Sbjct 141891 GGGCTACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGCGACCGCTTCTGTCG 141832 Query 153620 ACTTGAT-TATCAGAAGTTCGGAAGCATCAAAGGGATCACTGATAAGGGTTGGTATACAA 153678 || ||| | | ||| ||||| | || | |||||||| |||| || || | Sbjct 141831 TCTGGATAAAGCCGAA-TTCGGGCTGGTGGCCGGTGTGACTGATAAAGGTTACTACACCA 141773 Query 153679 ACAGTTTCCATCTTGACGTTGACCGCAAGGTAACACCGTTCGAGAAAATCGACTATGAAG 153738 |||| |||||||| ||||| || ||||||| |||| ||| ||| |||||| |||| Sbjct 141772 ACAGCTTCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAACTCGACTTCGAAG 141713 Query 153739 CCGATTAT-CATTACATTGCGACTGCTGGACATATCAGCTATGTAGAATTTCCTGATATG 153797 | ||| | || || || || || ||| |||||| |||| ||| | || Sbjct 141712 CGCCGTATCCGCCACTCAGCAACGGC-GGTTTCATCTGCTATGGCGAATACCCTAACCTG 141654 Query 153798 AAAAACAACCTGGAAGCACTTGAAAAAGTCTGGGATTAC 153836 || |||| ||| |||| || ||| | || ||||||||| Sbjct 141653 CAACACAATCTGAAAGCGCTGGAAGACGTGTGGGATTAC 141615 >seq35 Length=455554 Score = 93.3 bits (102), Expect = 5e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 40567 ATCATCGTTTCCGCATGGAATCCGGTTGATCTTGATGCAATGGCTTTGCGTCCGTGTCAC 40626 || ||||| || |||||||| || || || ||| ||||| || || || ||| Sbjct 112509 ATTATCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCAC 112568 Query 40627 TGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCG 40686 ||||||||||||| || | |||||||| |||| ||| ||| ||||| || Sbjct 112569 GCTTTCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCA 112628 Query 40687 GTTGATGTCTTCTTAGGGTTGCCGTTCAATATAGCCTCATACGCTCTCCTGACGCATATT 40746 ||| ||||| | || |||||||||||||| ||| ||||| || ||| |||||| Sbjct 112629 TGCGATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATG 112688 Query 40747 ATCGCTGATATTTGCGGGTATGAAGTAGGCGATCTGGTTTGGACTGGTGGTGAT 40800 || || | |||| |||||| || ||| | || ||||| ||||| ||| Sbjct 112689 ATGGCGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563313293761680