Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq785 136 6e-27 >seq785 Length=396209 Score = 136 bits (150), Expect = 6e-27 Identities = 237/342 (69%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 173221 TGGAAAGAACTGACTGGTTACGGATTTAGTCTGTACAGCACACCAAGCGAATCGCTATGT 173280 |||||||| || || ||||| || || ||||||||||| || |||||| || || Sbjct 141905 TGGAAAGACGAAACGGGCTACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 141846 Query 173281 GATCGTTTCTGTCGTCTTGATCAAGAGAAGTACGGTATCATTACTGGTATCAATGACAAA 173340 || || ||||||||||| ||| ||| | | ||| | | | ||| | | ||| ||| Sbjct 141845 GACCGCTTCTGTCGTCTGGATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAA 141786 Query 173341 GACTACTATACAAACTCGTTCCACTTAGACGTATTCAAGAAAGTGAATCCGTTCGAGAAG 173400 | ||||| || ||| ||||| | ||||| ||||| || ||||||| ||| || Sbjct 141785 GGTTACTACACCAACAGCTTCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAA 141726 Query 173401 ATTGACTTTGAAGCATCGTACCCAGCA-TATGCAAACGGCGGTTTCATTTGCTATGCAGA 173459 | ||||| ||||| |||| || || | |||| |||||||||||| ||||||| || Sbjct 141725 CTCGACTTCGAAGCGCCGTATCCGCCACTCAGCAA-CGGCGGTTTCATCTGCTATGGCGA 141667 Query 173460 GTTCCCGAACATGCGCGACAATATCAAAGGTCTAGAACGTGTATGGGATTATGCTCATAG 173519 | ||| ||| ||| ||||| | |||| || ||| || |||||||| | ||| Sbjct 141666 ATACCCTAACCTGCAACACAATCTGAAAGCGCTGGAAGACGTGTGGGATTACAGTTATAC 141607 Query 173520 CAAAGTTGCTTACTTCGGTACAAACACACCGATTGATCAATG 173561 | || | || | ||| || ||||| || || ||| |||| Sbjct 141606 CCGCGTGCCGTATTACGGCACCAACACGCCAATCGATGAATG 141565 Score = 125 bits (138), Expect = 1e-23 Identities = 530/828 (64%), Gaps = 23/828 (3%) Strand=Plus/Minus Query 171958 AAAGAAAACGCGAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCAGGT 172017 || || || || || |||||| ||||||||||| || ||||||| || | || ||| Sbjct 143153 AACGAGAATGCCAACAAAGACAGCAAAGTGATCCCGACCCAGCGTGACCTGCTGGCGGGT 143094 Query 172018 ACAGTTGCGAAACAATACGCACTCGAAGACTTTCTACCGAAGCACAT--TGCAGAAGCAC 172075 | || || || || ||||| | | || ||||| | | ||| | || | Sbjct 143093 ATTGTCGCCAAGCATTACGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTG--GCGC 143036 Query 172076 ATATAAGTGGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAATTCA 172135 || ||||||| || |||| |||||| | ||||| || || || ||| || | Sbjct 143035 ATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTA 142976 Query 172136 ACTGTATGCTTATTGATATCAAAGGCATGCTTGAAA-ACGGATTTAAAATGGGTAATGCT 172194 |||| ||||| || || | ||||||||| ||||| |||| || |||||||||||||| Sbjct 142975 ACTGCATGCTGATCGACCTTAAAGGCATG-TTGAATCACGGTTTCAAAATGGGTAATGCG 142917 Query 172195 GAGATCGAAGAGCCAAACAGTATCGCGACTGCTGCGACTATTGTCACTCAGATCATACAA 172254 || || || |||||| ||| | || || || | | | | ||||| || Sbjct 142916 GAAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCG 142857 Query 172255 CAAGTAAGTAGTCACATTTACGGCGGCAACACTGTTAATAGAATTGACGAAGTTCTAGCA 172314 || || || || ||||||||||||| || |||| | || |||||||| || || Sbjct 142856 CAGGTCGCCAGCCATATTTACGGCGGCACGACCATTAACCGCATCGACGAAGTACTGGCG 142797 Query 172315 CCATATGTTCGTAA--GTCGTATT--ACAAATGGCTTGAGGTTGGTCGCGAAGAGCATCC 172370 || |||||| | | | || | ||| | | || || ||||||| | Sbjct 142796 CC----GTTCGTCACCGCCAGCTTCAATAAACATCGTCAGACTG---CCGAAGAG-TGGC 142745 Query 172371 CGATTCAGACTCAAAAGCAGCTATCTTTGCACGTAAACGTGTCGAGAAAGAAACGTACGA 172430 |||| || | || | | |||||| | | ||| ||| ||||| || || Sbjct 142744 AGATT-----GCAGATGCGGATGGCTTTGCTCACAGCCGTACCGAAAAAGAGTGTTATGA 142690 Query 172431 CGCTTTTCAAACGTTTGAGTATCAAGTTAACACAATGCAGACTTCGAACGGTCAGACGCC 172490 ||| || || || | || ||| | ||||| || |||| || | ||||| |||||||| Sbjct 142689 CGCCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCC 142630 Query 172491 ATTCACGACGATTAACTTCGGTCTAGGTACATCGTGGGAAGAAAAGCTTATTCAGAAATG 172550 || || | || || || || ||||| |||||| || || ||| ||| Sbjct 142629 GTTTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGGGAATCGCGCCTGATCCAGCAATC 142570 Query 172551 CATTCTGCAAAATCGAATTGCTGGTCTAGGCAAGACAAAGAAAACAGCGATTTTCCCGAA 172610 ||||||| || || ||||| || || ||||| | ||||| || | ||||| || Sbjct 142569 AATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCCAAA 142510 Query 172611 ACTTGTATTCACTATCAAAGATGGTGTGAACTTGAAAGAAGGCGATCCGTGTTACGGCAT 172670 ||| || || | ||| || || |||| |||| || || | |||| ||| Sbjct 142509 ACTGGTGTTTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAACTACGACAT 142450 Query 172671 TAAGAAGCTTGCACTTGAATGCGCAAGTAAGCGCATGTATCCAGATATCTTGAGCTATGA 172730 ||| | || ||||| |||||||| || ||||| ||||| || || ||| | | ||||| Sbjct 142449 CAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAATTATGA 142390 Query 172731 AAAGCTAGTAGAAACAACTGGCGGGTTTAAGTCACCGATGGGATGTCG 172778 || | || || || || ||| || | |||||||| || || Sbjct 142389 TCAGGTGGTGAAAGTCACAGGTTCGTTCAAAACGCCGATGGGCTGCCG 142342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791225823247440