Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq35 251 1e-61 >seq35 Length=455554 Score = 251 bits (278), Expect = 1e-61 Identities = 241/309 (78%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 98895 ATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGAAAGGTACGCCGAAGAAAGAC 98954 ||||||||||||| ||||||||| |||| | | | || || || || ||| Sbjct 112128 ATGAAACAGTATCTGGATTTAATGCAGAAAGTGCTCGATGAGGGCACCCCTAAAGCCGAC 112187 Query 98955 CGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCAAGAA 99014 ||||||||||| |||||| | || || || || || |||||||||||||||||||| ||| Sbjct 112188 CGTACCGGTACGGGCACGTTGTCGATTTTTGGTCATCAGATGCGTTTCAACTTGCAGGAA 112247 Query 99015 GGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACTGCTG 99074 |||||||||||||| |||||||| || ||||| | ||||| ||||| |||||||| ||| Sbjct 112248 GGTTTCCCGCTGGTCACGACCAAACGCTGCCATTTACGCTCCATTATTCATGAACTCCTG 112307 Query 99075 TGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCATTTGG 99134 ||||||||||||||||| || || || || ||| || || ||| | ||| ||| Sbjct 112308 TGGTTCCTGAAAGGCGAAACTAACATTGCTTATCTGCGTGAAAACAATGTCAGCATCTGG 112367 Query 99135 GACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCGGGCA 99194 ||||| ||||| ||| |||| ||||||||||| ||||| ||||| ||||| ||||| || Sbjct 112368 GACGAGTGGGCTGACGAAAACGGCGACCTCGGACCGGTTTACGGCAAGCAATGGCGTGCC 112427 Query 99195 TGGACTGCG 99203 ||| |||| Sbjct 112428 TGGGGTGCG 112436 Score = 127 bits (140), Expect = 3e-24 Identities = 228/328 (70%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 99583 GTAAGTTGTCTTGTCAGCTCTATCAGCG-TAGTGCCGACGTGTTCTTGGGTGTGCCGTTT 99641 |||| ||||| || ||||| || ||||| | ||| || | ||| | || ||||||| Sbjct 112597 GTAAATTGTCCTGCCAGCTGTACCAGCGCTCATGC-GATATCTTCCTCGGCTTGCCGTTC 112655 Query 99642 AACATCGCGTCGTATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGT 99700 || ||||| || || || ||| | || ||| | || || || |||| || | | Sbjct 112656 AATATCGCCAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCTTGAAG-T 112714 Query 99701 GGGCGATTTCGTCTGGACCGGCGGTGATGTGCATCTGTATTCTAACCATCTGGAACAGGC 99760 ||| ||||| |||||||| || || ||| ||| ||||| ||||| |||||||| | Sbjct 112715 GGGTGATTTTGTCTGGACGGGTGGCGATACGCACCTGTACAGCAACCACATGGAACAGAC 112774 Query 99761 ACGTACTCAGTTAGGTCGTACTCCGCGTGCGTTGCCTAAGCTGATTATCAAACGTAAGCC 99820 | | || | | ||| || ||||||||||| || || | || || || || || Sbjct 112775 GCATCTGCAACTGAGCCGTGAACCCCGTGCGTTGCCAAAACTTGTCATTAAGCGCAAACC 112834 Query 99821 GGACTCTATCTTCGACTATAAGTTCGAAGATTTTGATATCGAAGGCTACGACCCACACCC 99880 || ||| | || || || || ||||||||||| || || ||||| ||||| || ||||| Sbjct 112835 GGCCTCCTTGTTTGATTACAACTTCGAAGATTTCGAGATTGAAGGGTACGATCCGCACCC 112894 Query 99881 GGCTATTAAAGCACCGGTGGCGATATGA 99908 || || || ||||| || || || ||| Sbjct 112895 TGCAATCAAGGCACCTGTCGCTATCTGA 112922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716020187781360