Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq223 161 3e-35 seq25848 91.5 4e-14 >seq223 Length=511576 Score = 161 bits (178), Expect = 3e-35 Identities = 215/299 (72%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 33176 GAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCGGAAGTTAAATATA 33235 |||| | |||||||| || | | || | ||| ||||||||||||||||| || | Sbjct 459877 GAGGCGTAAACAAAGTTATTCTCGTCGGTAATCTGGGACAAGACCCGGAAGTCCGCTACA 459818 Query 33236 TGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATA 33295 ||||| |||||||| || ||| | |||||||||| || ||| ||| || | Sbjct 459817 TGCCTAACGGCGGCGCGGTTGCCAACATCACTCTGGCAACGTCTGAGAGCTGGCGTGACA 459758 Query 33296 AAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGC 33355 |||| || || || ||||||| | || |||||||| || ||||| | ||||| || Sbjct 459757 AAGCCACCGGCGAGCAGAAAGAAAAAACGGAATGGCACCGTGTGGTGTTGTTCGGCAAAT 459698 Query 33356 TGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAAT 33415 | ||||| || || |||||||||||| ||||| |||||||| || | ||||| | Sbjct 459697 TAGCAGAAGTCGCAGGCGAATACCTGAAGAAAGGTTCTCAGGTCTACATCGAAGGCGCAC 459638 Query 33416 TACGTACTCGCAAATGGACAGATCAAAGCGGTGTTGAAAAATACACTACTGAAATCGTC 33474 | | || || |||||||| ||||| || |||||||||||||| || ||| ||||| Sbjct 459637 TGCAAACCCGTAAATGGACCGATCAGGCTGGCGTTGAAAAATACACCACCGAAGTCGTC 459579 >seq25848 Length=116905 Score = 91.5 bits (100), Expect = 4e-14 Identities = 182/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 33163 ATTATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTCGGACAAGACCCG 33222 || |||||| || ||||| |||||||| ||||| |||| | | | || || | ||| Sbjct 107977 ATCATGGCAGAACGTGGAATTAACAAAGTCATCATCGTGGGTAATTTAGGTCAGGCACCG 108036 Query 33223 GAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGTCTCTGGCAACATCAGAG 33282 || | || ||||| |||||||| ||| | ||| | ||||| || || || Sbjct 108037 GAGCTGCGCTACATGCCGAACGGCGGCGCGGTGGCGAGCCTGACGCTGGCCACGTCCGAA 108096 Query 33283 CAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTT 33342 | ||| || ||||| || || || || || | || || ||||| |||||||| Sbjct 108097 AACTGGCGTGACAAAGCCACCGGCGAGCAGCGCGAAAAAACCGAGTGGCACCGCGTGGTC 108156 Query 33343 ATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTAT 33402 | |||||||||||||| || | || || ||||||||| ||| ||| | | || || Sbjct 108157 GTGTTCGGAAAGCTGGCCGAAATTGCCGGTGAATACCTGACCAAGGGCGCAAAAGTCTAC 108216 Query 33403 GTAGAAGGAAAATTACGTACTCGCAAATGG 33432 | ||||| | | | || ||||||||| Sbjct 108217 ATCGAAGGCCAGCTGCAGACCCGCAAATGG 108246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151920518010312