Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq223 233 2e-56 seq18382 120 3e-22 >seq223 Length=511576 Score = 233 bits (258), Expect = 2e-56 Identities = 359/512 (70%), Gaps = 0/512 (0%) Strand=Plus/Minus Query 28796 CAAGACCGTCGCTGCGTATTTTGTGGAATGGAGCGTGTACGGCCGCAACTTTTCGGTGGA 28855 |||| ||| | || |||||||| || ||| ||||||| || ||| || || ||||| Sbjct 113983 CAAGGTCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGA 113924 Query 28856 CAAGGTGCCGCTGCCCAACCTCTCGCATCTGTTATACGGCTTCGTACCTATTTGCGGCGG 28915 || | || || ||||| | ||| | || ||||||||| || ||||||||||| Sbjct 113923 TAAAATCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGG 113864 Query 28916 CGACGGGCTCAACGACGCCCTTAAAACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTC 28975 |||||| | |||||| | |||| ||| || |||||| | || ||||||| | Sbjct 113863 GGACGGGATTAACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGC 113804 Query 28976 GTGCAACGGCCGTTCAGATTTTAAAGTTGCTATTCACGATCCTTGGGCCGCAATACAAAA 29035 || || ||| |||||||||||||| || |||||||| ||||| || | || | Sbjct 113803 CTGTGCGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGAT 113744 Query 29036 ACCGCAAAAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGCAATTTCGGTCAGCTCAT 29095 || || | ||||| || | | || || ||||| ||||| |||||||| || Sbjct 113743 GCCTCAGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGAT 113684 Query 29096 GGCTGCCAAGTTGGCCAATCCACACATCAAAATTCTACCGTCCATAGGCGGCTGGACATT 29155 ||| || ||| ||||| || | |||||| | || ||||| || |||||||| || Sbjct 113683 GGCGCTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTT 113624 Query 29156 GTCCGACCCTTTTTATTTTATGCACGACGCGGAGAAACGGCGCGTGTTTGTGGACTCGGT 29215 ||| ||||| || ||||| ||| | || || ||| ||| ||| || || | |||||| Sbjct 113623 GTCAGACCCGTTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGT 113564 Query 29216 CGAGGAATTTTTGCAGGTGTGGAAATTTTTTGACGGCGTAGACATTGACTGGGAATTTCC 29275 | ||||| |||| ||||| || |||||||| || || ||||||||||||||||| Sbjct 113563 AAAAGAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCC 113504 Query 29276 GGGCGGTAAAGGCGCTAACCCGACACTTGGCA 29307 ||||||| || | |||||| | || |||| Sbjct 113503 GGGCGGTGGCGGTGAAAACCCGGCGCTGGGCA 113472 >seq18382 Length=19407 Score = 120 bits (132), Expect = 3e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 || || || ||||| ||||||||||| ||||| || ||||| || | ||||| | Sbjct 13710 GGTGGATTCTTCAGGATGAAGGTGTTCAGCTTGTGATTGAAGTCCAGAGCCCCGTGGAAG 13769 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| || |||||||||||| |||| | ||| || ||| || | ||||| ||| Sbjct 13770 CCGCAAGCCTTGCAGCCCTGAGAGATGTTCCCCTTCTTGGCGCTGACCAGCAGCTCTGTC 13829 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 |||||||||||||| || || |||| ||||||||||||||| || Sbjct 13830 TCCGGGTTGTCACACTCGGGGCACAGCACAAACTTGCGGATAAA 13873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412495261247162