Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6691 122 1e-21 seq8431 86.0 1e-10 seq4605 86.0 1e-10 >seq6691 Length=42033 Score = 122 bits (134), Expect = 1e-21 Identities = 146/198 (74%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || |||||| |||||||| ||| | ||||||||||||||| ||||| Sbjct 14230 ACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCACGCTT 14289 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||||||||||| |||||||| ||||| ||||| || || ||| || || Sbjct 14290 CTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAAGCGAA 14349 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || | ||||| | || ||| || | || || |||||||| || ||||| Sbjct 14350 GGCCACCACACGCTCCCCGAAGGTGGCCGTG---TCGCTGCCGATCCACTGCAGGGCCCA 14406 Query 794520 CTCTGCCTTTTTCCTCAC 794537 |||||||| ||| |||| Sbjct 14407 GTCTGCCTTCTTCTTCAC 14424 Score = 100 bits (110), Expect = 4e-15 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| |||||||||||||| || || ||||||| ||||| | ||| ||||| Sbjct 13942 CTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCATGTCCATGAAGCTGAAGGGGTTCTT 14001 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAG--CGACGCAAGCAGGCGGTCGGCGACGAATTCA 794042 | ||||||||| | || || || | || |||| || |||||||| || |||||| Sbjct 14002 GGATCCGTAGTGCTTGGCACAGCCCAGGTCCAC-CAAG-AGCCGGTCGGCCACAAATTCA 14059 Query 794043 ATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTG 794102 || ||||| |||| ||| || ||||||||| | || |||||||| | ||| || Sbjct 14060 ATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACGGGCAGGGCGTCGGTG 14119 Query 794103 ACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 | |||||||| || || ||| || || ||| ||| Sbjct 14120 AGAAACTCTTGTTCAATGATGACAGCATCCTTGACGAT 14157 >seq8431 Length=66997 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||||||| ||||| | || ||||| | ||||||||||||| ||| Sbjct 37501 GCCTCGGTGGCGCAGTTGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCAATC 37442 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 37441 CTCACCCGGGGCATATC 37425 >seq4605 Length=58853 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||||||| ||||| | || ||||| | ||||||||||||| ||| Sbjct 22700 GCCTCGGTGGCGCAGTTGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCAATC 22641 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 22640 CTCACCCGGGGCATATC 22624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908924213468126