Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4062 143 2e-29 seq8521 129 4e-25 seq48539 114 8e-21 seq223 109 4e-19 seq15643 107 1e-18 seq8056 95.1 8e-15 >seq4062 Length=67394 Score = 143 bits (158), Expect = 2e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 |||||| |||||||| | |||| ||||||||| ||||| |||||||| || | | | Sbjct 48379 CCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTCCTGCC 48320 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||| ||||| |||||||||||||| | ||||||||| | || | || ||||| Sbjct 48319 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTT 48260 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || ||||| | | || | ||| | ||| || || | ||| || Sbjct 48259 ATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGGGTGAT 48200 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||| |||||||||||||| || |||||||||||||| Sbjct 48199 AGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 48161 >seq8521 Length=40141 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||||||||||||||| || ||| | || |||| Sbjct 2230 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCT 2171 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||||||||||||||||| | ||||| ||| | || | || ||||| || Sbjct 2170 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2111 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | ||| || ||| || || | ||| || | Sbjct 2110 TGGATCTTGGCTTTCAC--ATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTG 2053 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || || |||||||| Sbjct 2052 TCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||| || || ||||| ||||| || ||| | || |||| Sbjct 2914 AGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCT 2855 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||||||| || ||||||| | ||||| ||| | || | || ||||| || Sbjct 2854 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2795 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | || || ||| || || | ||| |||| Sbjct 2794 TGGATCTTGGCTTTCAC--ATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGG 2737 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || ||||| || |||||||||||||| Sbjct 2736 TCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| || ||| | || |||| ||||| |||||||||||||| Sbjct 2666 CTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAA 2607 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | ||||| ||| | || | || |||||||| | || || || || Sbjct 2606 GATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATT 2547 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 |||| | || || ||| || || | ||| || ||||| || || || ||||| || Sbjct 2546 CTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGAC 2487 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 2486 GAAGATCTGCAT 2475 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 2458 AGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 2399 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||||||||| ||||||| | ||||| ||| | || | || |||||||| Sbjct 2398 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGTCC 2339 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||||| || || || || || || || || | || |||| Sbjct 2338 TGGATTTTGGCCTTGAC--ATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGG 2281 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | ||||| |||||||||||||| Sbjct 2280 TCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| |||||||||||||| ||||| || ||| | || |||| Sbjct 2002 AGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTACGACCATCT 1943 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| || || ||||||| | ||||| ||| | || | || |||||||| Sbjct 1942 TCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTC 1884 >seq48539 Length=7100 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| || || || || || ||||| || ||| |||| |||| Sbjct 6698 AGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCC 6639 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| |||||||||| | ||||| ||| | || | || |||||||| Sbjct 6638 TCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCT 6579 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | ||| | ||| || || | || || ||| Sbjct 6578 TGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTC 6519 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||||||||| |||||||||||| Sbjct 6518 TTTCCGGTAAGGGTCTTTACGAAGATCTGCATG 6486 >seq223 Length=511576 Score = 109 bits (120), Expect = 4e-19 Identities = 321/490 (66%), Gaps = 16/490 (3%) Strand=Plus/Plus Query 6046 CCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTTCCAGGTCTCCAGAAAC 6105 || |||||||| |||||||| || ||||| |||||||||||||||||||| | ||| || Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 6106 TC----GCGGACGCTTGTGACGAACACCTCACGCTTAGAGTCATCGTTCATGAAATAAAA 6161 || | || ||| ||||| || || ||||| | | ||| ||||||||||| || Sbjct 113558 TCTTTTACCGAGGCT----ACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAA 113613 Query 6162 CGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAACGAGGGGTTGTGACG 6221 ||| || ||||||||| || || ||||| || | | ||| || | | Sbjct 113614 CGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTT 113673 Query 6222 TTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTGTACGCCTCAACACC 6281 ||| | ||||||||||| ||||| ||||| || || | | || | || || Sbjct 113674 TTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCC 113733 Query 6282 TTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACCTTGAAGTCATCGCG 6341 || ||| || | |||| ||| |||||| ||||| || || || || || | || Sbjct 113734 TTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACG 113793 Query 6342 ACCAGCGCAGGATTTCTGTAGCGCCTCAAAGGAATTG---GGAATCTGCTTGAGGGCGTC 6398 || || |||| || | |||| || || || ||| || | ||| Sbjct 113794 CCCCGCACAGGCGCGTTGCAAGGCCTGAA---AACTGCCCTCAATGCTTTTTAAACTGTC 113850 Query 6399 GTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGG 6458 ||| || ||| || || ||||| || |||| ||||||| | || ||||| || | Sbjct 113851 GTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTG 113910 Query 6459 TATTGGTACCTTGTCAATGG-GAAACTGTCTGCCATACACTCCCCACTCCACGAAATACG 6517 || | || || | || ||| | | | |||||||| |||||||| || ||||| | Sbjct 113911 CGCAGGGATTTTATCCACGGAGAATCCG-CGACCATACACGCCCCACTCAACAAAATATG 113969 Query 6518 CACCGACGAC 6527 | || ||||| Sbjct 113970 CGCCAACGAC 113979 >seq15643 Length=27379 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || | ||||| ||| ||||||||| || || || || || ||| | || |||| Sbjct 12258 AGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAAAGGGTACGTCCATCC 12199 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || |||||||||||||||| | ||||| ||| | || | || || ||||| Sbjct 12198 TCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 12139 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | | || | ||| || ||| || |||| ||| ||||| Sbjct 12138 TGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACCTCAAGGGTGATGGTT 12079 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || || |||||||| Sbjct 12078 TTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 >seq8056 Length=34938 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 || || |||| ||| || ||||||||||| ||||| || ||| | || |||| ||| Sbjct 32339 ACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTACGTCCATCTTCC 32280 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| || ||||| |||| | ||||| ||| | || | || ||||| || | Sbjct 32279 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGA 32220 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 ||||| |||||| | | || | || || ||||| || | ||| || ||||| Sbjct 32219 ATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACCTCCAGGGTGATTGTCTTG 32160 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||||| || |||||||||||| Sbjct 32159 CCAGTTAATGTCTTGACGAAGATCTGCATG 32130 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| || || || || || ||| |||| |||| || | ||| ||||| ||||| Sbjct 32094 CTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAA 32035 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || ||||| || || | || | || || ||||| | ||||| || || Sbjct 32034 GATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATT 31975 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | |||| || || ||| || || | || || |||||||| || | || || || Sbjct 31974 TTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCAC 31915 Query 34966 AAAGATCTGCATGAT 34980 || ||||||||||| Sbjct 31914 GAAAATCTGCATGAT 31900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325419571628246