Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq11088 646 0.0 seq6760 306 9e-79 seq25848 179 9e-41 seq725 178 3e-40 seq19589 102 2e-17 >seq11088 Length=48063 Score = 646 bits (716), Expect = 0.0 Identities = 444/501 (89%), Gaps = 0/501 (0%) Strand=Plus/Plus Query 18570 ATGAATCGCCACAGATAATCTAGACACTTCCGAGCCGCTGATAATATTGGTTTTCGTATT 18629 |||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct 18553 ATGAATCGCCACGCATAATCTAGACACTTCCGAGCCGTTGATAATACTGGTTTTCATATT 18612 Query 18630 CAGTTGGTGGCATATGATCACTCGAACCATGCCGACGCTTACTGTTATAAAACATTTCGA 18689 | || |||| ||| ||||| || || |||||||||||| ||||||||||||||||||||| Sbjct 18613 CTGTCGGTGACATCTGATCGCTAGAGCCATGCCGACGCCTACTGTTATAAAACATTTCGA 18672 Query 18690 TGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCC 18749 |||||||||||||||| | ||| |||||||| ||||||||||||| |||||||||||||| Sbjct 18673 TGTAATCAAAAATATCGCTGCGGGCTTCTTCCCGCGTTCCGTAGACCTTTTTCTTTATCC 18732 Query 18750 GTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGC 18809 | || |||||||||| ||||||||| |||||||| || || || || || |||||||||| Sbjct 18733 GCTCGCGTTTCAGTAACTGGAAAAAGCTTTCTGCAACCGCATTATCGTGGCAGTTACCGC 18792 Query 18810 GACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCTTG 18869 |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 18793 GACGACTCATGCTGCCCTCCAGGCCGTGTGATTTCAGGAACGACTGCCACTCATGGCTTG 18852 Query 18870 TGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCACA 18929 ||||||||||||| |||| || |||||||||||||| ||||| || ||||| ||||| | Sbjct 18853 TGTACTGACTGCCCGGATCCGAGTGAACCAGCACCTGTTTTTGGGGGTTACGCCGCCATA 18912 Query 18930 CGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGC 18989 | |||||||| ||||| ||||||||||| |||||||||||||||| | ||||||| ||| Sbjct 18913 CAGCCATCAGCAGTGCGTTCAGGACAATGTCCTTTGTCATCCGGGATTACATTGACTAGC 18972 Query 18990 CAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAG 19049 | |||| |||||| |||||||| ||||||||||| || |||||||||||||||||||||| Sbjct 18973 CGATAATTTTGCGTGAGAACAGATCAACAACCACGGCAAGATACAGCCAGCCTTCGTGAG 19032 Query 19050 TCCGGATGTAGGTGATGTCCG 19070 ||| ||||||||| ||||||| Sbjct 19033 TCCTGATGTAGGTTATGTCCG 19053 Score = 282 bits (312), Expect = 1e-71 Identities = 207/241 (86%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 19081 CTCATCCGGTGCTTCCGAGTTGAACTGCCGCTGGAGCCTGTTGGGCGTCACGATGCTGGT 19140 ||||||||| ||||||| |||||||| ||||||||||||||||||| |||||| |||| Sbjct 15806 CTCATCCGGAGCTTCCGGATTGAACTGTCGCTGGAGCCTGTTGGGCGACACGATACTGGC 15865 Query 19141 TTCACCCTTACGTGCCCGTGGGCTACGGTACCCGACCTGAGCCCTTATCCCGGCACGCTT 19200 || || ||||||||||| ||||| ||||| |||||||||||| ||||||||||||| || Sbjct 15866 CTCGCCTTTACGTGCCCGCGGGCTCCGGTATCCGACCTGAGCCTTTATCCCGGCACGTTT 15925 Query 19201 CATCAGTCGCCAGACACGGTTAACTCCGCACTGTTGTCCGGTATCCCGCAGGTCGAGGTG 19260 ||||||||| ||||| | ||| |||||||||||||| ||| |||||||||| | || || Sbjct 15926 CATCAGTCGTCAGACTCTGTTGACTCCGCACTGTTGCCCGCTATCCCGCAGATTCAGATG 15985 Query 19261 GATCTTGCGATAACCATAAACGCAACCCGACTCCAGCCAGAACTGCTTTATCAGCCCCGT 19320 |||||||||||||||||| || || ||||| |||||||||||||| || ||| | || || Sbjct 15986 GATCTTGCGATAACCATAGACACATCCCGATTCCAGCCAGAACTGTTTAATCTGTCCTGT 16045 Query 19321 C 19321 | Sbjct 16046 C 16046 >seq6760 Length=71796 Score = 306 bits (338), Expect = 9e-79 Identities = 364/494 (74%), Gaps = 0/494 (0%) Strand=Plus/Plus Query 21745 CGAGGTCTCTGTTTAACTTCGGTATAAATCCGGCCAATGTACTCGCCCAAAACTCCGATA 21804 || ||||| ||||| ||| ||||||||| || |||||||| || | || || ||| Sbjct 16328 CGTGGTCTTTGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATA 16387 Query 21805 CCAATGAGCTGCACACCACCGAGAAAAAGTATTGATACCAGCAATGATGGATAACCGCGC 21864 || || ||||| | |||||||| ||||| || || |||| | || |||||||| | Sbjct 16388 CCTATTAGCTGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGA 16447 Query 21865 ACAGGATTCCCGAATGCAAGCGTATCAATGATCATCCAGGCACCGTACAGGAAAGCCAGG 21924 || || || || || || || ||||| ||||| | ||||||| ||||| ||| Sbjct 16448 ACGGGGTTGCCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGA 16507 Query 21925 CCTGCAACGAACAGGCCAATGTACGTCCACATGCGTAACGGAAATGTTGAGAAGCTGGTA 21984 || || || || || || || ||||||||||| || | ||||| |||||||| || Sbjct 16508 CCGGCCACAAAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTT 16567 Query 21985 ATCCCTTCAAGCGCCAGGTTCCAGAGCTTCCAGCCATTAAACTTAGTGCTGCCAGCAACA 22044 || ||||| || || |||||||| || ||||| |||||||| || || || ||||| Sbjct 16568 ATGCCTTCGAGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACG 16627 Query 22045 CGCTCAGCGCGAGCATATTCAACAACATCTGTACTCCCACCAACCCAGCTCAATACTCCT 22104 || ||| | || | |||||| ||||| || || | ||||| ||||| || || ||| Sbjct 16628 CGTTCATCTCGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCT 16687 Query 22105 TTCATGAACAGGTTGCGTTCTGGTAATAATTTAATGTTTTCCACAACTCCGCGAGACATT 22164 |||||||| | ||| ||||| || | || ||||||||||| || || ||||||||||| Sbjct 16688 TTCATGAATAAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATT 16747 Query 22165 AGTCGGAAATCGCCGACGTTCTCCTCAATCTTTGGATTGCTTATTTTATTGTGAAGTTTA 22224 | | ||||||||| ||||| ||||||||||| || ||||| || | || || || ||| Sbjct 16748 AACCTGAAATCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTA 16807 Query 22225 TAGAACCACTCAGC 22238 || ||||||||||| Sbjct 16808 TAAAACCACTCAGC 16821 >seq25848 Length=116905 Score = 179 bits (198), Expect = 9e-41 Identities = 287/410 (70%), Gaps = 4/410 (1%) Strand=Plus/Plus Query 18674 TTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAG 18733 ||||||||||| |||| ||||| || ||||| | || |||| | || ||| Sbjct 82883 TTATAAAACATCTCGACATAATCGAAGATATCCGCCTTCACTCCTTCCCTATTTTTATAG 82942 Query 18734 ATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTG 18793 ||| ||| ||||| ||||| ||||| || | ||||||||| ||||| || ||||||||| Sbjct 82943 ATCCGTTTATTTATGCGTTCCCGTTTTAGCAACTGGAAAAAGCTTTCCGCTACTGCGTTG 83002 Query 18794 TCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGAC 18853 ||||| || ||||| ||||| ||||| |||| | | ||| | | ||| || | Sbjct 83003 TCATGGCAATTACCCCGACGACTCATGCTGCTTTTTAAATTGTGAGCTGTCATAAAATTC 83062 Query 18854 TGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCAC--CTGCTTTT 18911 || || ||||| || || ||| ||| ||||| ||||| | | || |||| || Sbjct 83063 TGACATCTTTAGCTCGTATATTGAGAGCCCTGATCTGAATGGATTAATACTTCTGCCGTT 83122 Query 18912 GAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCC 18971 || ||||||||||| || ||||||| | ||||| || || | || ||||| | Sbjct 83123 --GGTTTACGTCGCCATACCGCCATCAATAATGCATCCATTACTAACTCAGCGGTCATTC 83180 Query 18972 GGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGAT 19031 | ||| |||||| ||||| |||| ||||| || |||| ||| |||||||||| Sbjct 83181 GTCCGCCCATGCTCCAGCCGATAACCCTGCGTGAGAAGAGATCAAGAACAACAGCCAGAT 83240 Query 19032 ACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGC 19081 ||||||| || || || |||| || || || || || | |||||| || Sbjct 83241 ACAGCCAACCCTCATGCGTCCTTATATAAGTCATATCACTAACCCAATGC 83290 >seq725 Length=236385 Score = 178 bits (196), Expect = 3e-40 Identities = 486/731 (66%), Gaps = 25/731 (3%) Strand=Plus/Plus Query 23827 GACATTCATCAATCAGCCTTTGTGCTTCATGGGGCTCCAGCCAGCGGATCCGTTTATTCT 23886 |||||||||||| ||| | ||| ||||||| || || ||||| | || || ||||| | Sbjct 173925 GACATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTT 173984 Query 23887 TTGGTTGAGGCACTTTAATAATTGGTGCCTTATCCAGCATTTTCCATTCACGCTCTGCGG 23946 ||| || || ||||| || | ||| || || |||||| |||||| || || ||||||| Sbjct 173985 TTGCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGG 174044 Query 23947 CTCTTAGTAGGGCCTTTATAAATGAAAGATGCGTAGCCTTCGTTGCAACGGACGCTGG-- 24004 | | || || | ||| || | | || || | ||||| || || | ||| Sbjct 174045 CGCGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGTG----CTGACC 174100 Query 24005 TTTTGGCGTGTATTCT--GGAACAGGTTTCCCtttttttCTGCATGCTTCTGCCCTGAGT 24062 || ||||| || || || | ||||| | || | || | ||| ||| | Sbjct 174101 TTCTGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTT-CGCCAAGGA-CTG---TGAAT 174155 Query 24063 TT---CCA--GTTTTCCTCATGACGCCGGTTCGTCATTTT-CTGCATTGCTGAATAAATT 24116 | | ||||||| | || ||||| |||||| ||| || || | || ||| Sbjct 174156 GCAACCGATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTG-ATCGCCGTGTAGATT 174214 Query 24117 TTTGATTCAGTAATGTCTCTTAGTTGCATTCCTGCGAAATGTTGAAGCCAGAATCCGATC 24176 || | ||| ||||| || | | | || ||| | ||||| ||||||||||| ||| Sbjct 174215 TTGGCTTCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATC 174274 Query 24177 CGGCTTTTGTCATCGTCCAGTGATTTTTTATGTGCTTTCTCTTCAAGCCACCTGACACAC 24236 |||||||||||||| ||||| ||||| || | || ||||| | |||||| | ||| Sbjct 174275 CGGCTTTTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAG 174334 Query 24237 GCTTCCTCGAACGTTATATCAGGTATTTCACCAAGTTTGCTGACCCGCCATGCTTCAGCC 24296 || || || || || | ||||| | || || || | | ||||| || | Sbjct 174335 GCCTCTTCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGAT 174394 Query 24297 TTTAGCTTGTCATGGAG-TTCTGTCGCCTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTT 24355 ||| ||||| || || | |||| |||| ||| |||| | ||| |||||||| | ||| Sbjct 174395 TTTCTTTTGTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTT 174453 Query 24356 AAATCTTTTACCGTTCGGCAATGTGAAACTGGCGTACCATATTTCACCTCTGCGGAAGAG 24415 || ||||| ||| ||||| | ||| || |||||||| || | |||||| ||||||| Sbjct 174454 AAGTCTTTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGAT 174513 Query 24416 TGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTGGACAGTATGCAGCGGA 24475 ||||| || ||||||| ||| |||||| | ||||| |||||| | | ||| Sbjct 174514 AGACATGTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGT 174570 Query 24476 GACTGAAGAGCCGCAATGCAGGCTTGTCGTGTTGTGAGGTAAGGAGATTTATTCTTAGTG 24535 | || || ||||| || ||||| || || || |||||| || || || | Sbjct 174571 TTATTCAGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGAT 174630 Query 24536 GGATCTTTGCG 24546 ||||| ||||| Sbjct 174631 GGATCCTTGCG 174641 Score = 167 bits (184), Expect = 6e-37 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23289 GACTGGGACAAATTTGGGACCGATGGGTTCAGGATCGAGTCTATTTGCCGTGCGTGTTCG 23348 || ||||||| ||||||||| || | || | |||||| ||| ||||| || Sbjct 175478 GAGTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCC 175537 Query 23349 GTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCATTTCGATAGACTCCCAGCCT 23408 || | ||||| || || || || || ||||| || ||||| ||||| ||||||||||| Sbjct 175538 GTTAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCG 175597 Query 23409 CCCATTTCCTGTAAAACTGACAACGGGACTCCGGCTTGAACCAGCCAACTTGCCCAGGTG 23468 ||||||||||| | ||||||||||||||| ||||| |||| |||||| |||||||| ||| Sbjct 175598 CCCATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTG 175657 Query 23469 TGTCTCAAGTCGTGAAA 23485 ||||||| ||||||||| Sbjct 175658 TGTCTCAGGTCGTGAAA 175674 >seq19589 Length=24186 Score = 102 bits (112), Expect = 2e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 30827 GGTTTTCACCCGTCAGAATCTGGCGGGGATCCGTCAGTAAAATCAAAACATGATCCGTCA 30886 |||||||||||| |||||||||| |||||||||| |||||| |||||||| ||||| ||| Sbjct 11404 GGTTTTCACCCGCCAGAATCTGGGGGGGATCCGTTAGTAAATTCAAAACAAGATCCATCA 11463 Query 30887 GATaaaaaaaCTTCTCGTC 30905 ||||| ||||| ||| ||| Sbjct 11464 GATAATAAAACCTCTTGTC 11482 Score = 102 bits (112), Expect = 2e-17 Identities = 296/448 (66%), Gaps = 27/448 (6%) Strand=Plus/Plus Query 34258 CGGAGTCGCCGGACTCTTTTATGTTACG---CCCAAAACGTCGCCGCTGGGTTAACGAAA 34314 ||||| ||||||| |||| | || || ||| || || ||||| | | ||| | Sbjct 14771 CGGAGACGCCGGAATCTT--ACCTT-CGTATCCCGAAGCGCCGCCGGTACGAAAACACGA 14827 Query 34315 AGTACACGCGTTGGGTTAAGACGCAGCCGTGCGCATGTTGTGGAAAACCTGCTGATGATC 34374 | ||||| | ||||| ||| ||||| ||| | ||||| || ||||||||| Sbjct 14828 AATACACCCAATGGGTAAAGCGCCAGCCATGCTGCGGCTGTGGCAACGGGTCTGATGATC 14887 Query 34375 CCCACCACCTGATAGGCCACGGTCAGGGGGGAATGGGTACAAAAGCGCATGACCTCTTTG 34434 | |||||| | | ||| | ||| || || |||| ||||||||||||||||| || | Sbjct 14888 CGCACCACATCACTGGCAATGGTTTTGGCGGTATGGCAACAAAAGCGCATGACCTGTTCG 14947 Query 34435 TGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCATGCGGATACCGTGGCATTTGAAG 34494 || | || |||||||| | ||||||| || |||||| ||||| || | |||| Sbjct 14948 TGATCCCGCTGTGCAGACGGTGTCACGACTCACTTCATGCGAATACCCCGGATTGGGAAG 15007 Query 34495 AGAAGTATGGCTCTCAGCTGGAGCTGATA-TTTCGTTTTATCGATCGTGCGCTGGCAACT 34553 || | || | ||| | | ||| || | || | | || || |||||||| | Sbjct 15008 CAGAGCACGGTACACAGGAGCACCTGTTACTGACGACAT-TAGACCGCGCGCTGGCGATG 15066 Query 34554 GGCGT----GCT---GGC--------CTGATTTTGTGGAGAAATTTGATGCGTGATATTC 34598 || || ||| ||| | | |||||||||| | ||||||||||||| Sbjct 15067 GGTGTTATCGCTACCGGCAAACAAAAATAAAAGTGTGGAGAAA-ATAATGCGTGATATTC 15125 Query 34599 AGATGGTTCTTGAGCGTTgggggggATGGGCTGCTAGTGATAATTCAGGCGTTGACTATT 34658 | |||| || | |||| || | ||| || | |||||||||||||| |||| | Sbjct 15126 AACTGGTACTGGCTCGTTACGGCGTTTGG---GCGAAAGATAATTCAGGCGTGGACTGGT 15182 Query 34659 CTCCAATCGCAGCAGGATTTAAAGGGCT 34686 | || || || |||||||| ||||| || Sbjct 15183 CACCGATTGCCGCAGGATTCAAAGGCCT 15210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127000104713760