Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq223 116 1e-21 seq25848 105 2e-18 >seq223 Length=511576 Score = 116 bits (128), Expect = 1e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 23547 CAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGT 23606 ||| || ||||| || | || || | |||||||| ||||| || ||||||||||| || Sbjct 459672 CAGGTATTCGCCTGCGACTTCTGCTAATTTGCCGAACAACACCACACGGTGCCATTCCGT 459731 Query 23607 CTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGAT 23666 ||||| || |||||||||| ||||| |||| | || ||||| ||||| |||| Sbjct 459732 TTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACGCCAGCTCTCAGACGTTGCCAGAGTGAT 459791 Query 23667 GTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACCCAG 23720 |||| || || ||||||| ||| |||||| ||||||||||| | ||||| Sbjct 459792 GTTGGCAACCGCGCCGCCGTTAGGCATGTAGCGGACTTCCGGGTCTTGTCCCAG 459845 >seq25848 Length=116905 Score = 105 bits (116), Expect = 2e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23496 CCACTTGCGTGTCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTC 23555 ||| ||||| |||||||||| ||| ||| | || |||||| ||| || || Sbjct 108246 CCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGCGCCCTTGGTCAGGTATTC 108187 Query 23556 GCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTTCCTT 23615 |||||||| ||||| | ||| ||||| | || ||||||||||| ||||| ||||| Sbjct 108186 ACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTGCCACTCGGTTTTTTCGCG 108127 Query 23616 GCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGAC 23675 |||||||||| ||||| |||| |||| ||||||||||| | | | | || Sbjct 108126 CTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGCCAGCGTCAGGCTCGCCAC 108067 Query 23676 GGCATCGCCGTTTTGCAGGTAGCGCACTTCCGG 23708 || ||||||| ||| |||||||| ||||| Sbjct 108066 CGCGCCGCCGTTCGGCATGTAGCGCAGCTCCGG 108034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139169349390008