Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq223 266 3e-66 seq4062 87.8 1e-12 >seq223 Length=511576 Score = 266 bits (294), Expect = 3e-66 Identities = 366/512 (71%), Gaps = 0/512 (0%) Strand=Plus/Minus Query 29060 CAAGACCGTCGCTGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGA 29119 |||| ||| | || |||||||| || |||||||| ||||| ||| || | || || Sbjct 113983 CAAGGTCGTTGGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGA 113924 Query 29120 CAAAGTGCCGCTGCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGG 29179 ||| | || || ||||| | ||| | |||||||| |||| || ||||||||||| Sbjct 113923 TAAAATCCCTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGG 113864 Query 29180 CGACGGGCTCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTC 29239 |||||| | |||||| | |||| |||| ||||||||| |||| |||||||| | Sbjct 113863 GGACGGGATTAACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGC 113804 Query 29240 TTGCAAGGGCCGTTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAA 29299 || ||| ||| ||||| ||||| || || |||||||| ||||| ||| | || | Sbjct 113803 CTGTGCGGGGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGAT 113744 Query 29300 ACCGCAAAAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAAT 29359 || || | ||||| || | | || || ||||| || || |||||||| || Sbjct 113743 GCCTCAGCAAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGAT 113684 Query 29360 GGCGGCCAAGCTGGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATT 29419 |||| || ||| |||| |||| |||||| | || |||||||| |||||||| || Sbjct 113683 GGCGCTGAAAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTT 113624 Query 29420 GTCCGACCCGTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGT 29479 ||| |||||||||||||||||| | || || || ||| || || || | |||||| Sbjct 113623 GTCAGACCCGTTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGT 113564 Query 29480 CAGAGAATTTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCC 29539 | |||||| ||||| |||||||| |||||||| ||||| || |||||||| ||||| Sbjct 113563 AAAAGAATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCC 113504 Query 29540 GGGTGGCAAAGGCGCCAACCCGACACTTGGCA 29571 ||| || || | |||||| | || |||| Sbjct 113503 GGGCGGTGGCGGTGAAAACCCGGCGCTGGGCA 113472 >seq4062 Length=67394 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| || || ||| |||| |||| || Sbjct 48164 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGCCTTCT 48223 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| || || || ||||| ||||| ||||| | ||| || ||| Sbjct 48224 GACACCATCGAACATGTCAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCAG 48283 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || |||||||| || | || ||| | ||||||||||| Sbjct 48284 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCGGACTACAAC 48343 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || || |||||||| || | ||| ||||| |||| | || || ||| Sbjct 48344 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGAGGCTTCGCGGTGGA 48391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398542176518626