Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq48539 141 7e-29
seq15643 141 7e-29
seq8056 129 5e-25
seq8521 105 5e-18
>seq48539
Length=7100
Score = 141 bits (156), Expect = 7e-29
Identities = 171/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || | || ||| || ||||| ||||| || || || ||||||||||| || ||||
Sbjct 6942 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGA 6883
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| ||| || ||| || | ||| || || ||| | ||||| || |||||||| || ||
Sbjct 6882 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 6823
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
||| || || |||||||| ||| || | || ||| |||| | || || || |||| |
Sbjct 6822 AATTCCTTCCTTGTCTTG-AATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAA 6764
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|||| | || || ||||||||||| | ||| || ||||| |||||||||
Sbjct 6763 CTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714
Score = 140 bits (154), Expect = 2e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||| |||||||| || || |||||||| ||||| || || ||||| |
Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || || || | || |||||||| | |||| || |||||||| || ||
Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| ||||||||||| |||||||| || || |||| | || || ||| | || ||
Sbjct 6365 ATACCTTCTTTGTCTTG-AATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCAC 6307
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| | |||||| || |||||||| |||||||| || || |||||||| ||
Sbjct 6306 CTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256
Score = 136 bits (150), Expect = 3e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || | || ||| || ||||| ||||| || ||||||||||| || || || || |
Sbjct 6714 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGA 6655
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| |||||| ||| || | || || || || | ||||| || |||||||| || ||
Sbjct 6654 AAGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGG 6595
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || |||||||| | || ||||||| |||| | ||||||||| | || ||
Sbjct 6594 GATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAAC 6535
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| ||||| ||||| || || || | ||| || || || ||||||||
Sbjct 6534 TTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487
>seq15643
Length=27379
Score = 141 bits (156), Expect = 7e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| ||||| || ||||| ||||| || || || || || ||||| | || ||| || |
Sbjct 12261 CGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAAAGGGTACGTCCA 12202
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||| ||||| || || | ||||| || |||||||| || || || || ||||||
Sbjct 12201 TCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCTTTG 12142
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || ||||||| |||| | ||||||||| | ||||| ||||| || ||
Sbjct 12141 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACCTCAAGGGTGATG 12082
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||||| || || | ||| || || || |||||||||
Sbjct 12081 GTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATT 12046
>seq8056
Length=34938
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||||| || | |||||| || |||||||| |||||||| || || |
Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| || ||| || || || |||||||| | ||||| || |||||||| || ||
Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || || || ||||| |||||| | ||||| |||| | ||| || || |||| ||
Sbjct 32237 ATGCCTTCCTTATCTTG-AATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGAC 32179
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || ||||||||||| || || || || ||||||||
Sbjct 32178 CTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||| ||||||||||| || || || || || || || || ||||| | |
Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||||| ||| || | |||||| ||||| | || | | ||| |||||||| |||
Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| || ||||||||||| |||||| | || ||| |||| | || || || | || ||
Sbjct 32009 ATTCCTTCTTTGTCTTG-AATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAAC 31951
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | || || || || || || || ||||| || || ||||||||
Sbjct 31950 CTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903
>seq8521
Length=40141
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||| ||||| ||||| || || ||||||||||| || | | ||| ||
Sbjct 2234 ACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCC 2175
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || || || | ||||| || |||||||| || || ||||| || ||
Sbjct 2174 ATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTT 2115
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || | || ||| ||| | || | |||||||| | || || || || || ||
Sbjct 2114 ATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGAT 2055
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || | ||| || || || ||||||||
Sbjct 2054 TGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 384896034075594
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |