Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq48539 141 7e-29 seq15643 141 7e-29 seq8056 129 5e-25 seq8521 105 5e-18 >seq48539 Length=7100 Score = 141 bits (156), Expect = 7e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||| || ||||| ||||| || || || ||||||||||| || |||| Sbjct 6942 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGA 6883 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| || ||| || | ||| || || ||| | ||||| || |||||||| || || Sbjct 6882 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 6823 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || |||||||| ||| || | || ||| |||| | || || || |||| | Sbjct 6822 AATTCCTTCCTTGTCTTG-AATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAA 6764 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | || || ||||||||||| | ||| || ||||| ||||||||| Sbjct 6763 CTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714 Score = 140 bits (154), Expect = 2e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| |||||||| || || |||||||| ||||| || || ||||| | Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || | || |||||||| | |||| || |||||||| || || Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| |||||||| || || |||| | || || ||| | || || Sbjct 6365 ATACCTTCTTTGTCTTG-AATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCAC 6307 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | |||||| || |||||||| |||||||| || || |||||||| || Sbjct 6306 CTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | || ||| || ||||| ||||| || ||||||||||| || || || || | Sbjct 6714 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGA 6655 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || | || || || || | ||||| || |||||||| || || Sbjct 6654 AAGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGG 6595 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || ||||||| |||| | ||||||||| | || || Sbjct 6594 GATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAAC 6535 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| ||||| ||||| || || || | ||| || || || |||||||| Sbjct 6534 TTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 >seq15643 Length=27379 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| || ||||| ||||| || || || || || ||||| | || ||| || | Sbjct 12261 CGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAAAGGGTACGTCCA 12202 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| ||||| || || | ||||| || |||||||| || || || || |||||| Sbjct 12201 TCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCTTTG 12142 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||||| |||| | ||||||||| | ||||| ||||| || || Sbjct 12141 TCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACCTCAAGGGTGATG 12082 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || | ||| || || || ||||||||| Sbjct 12081 GTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATT 12046 >seq8056 Length=34938 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||||| || | |||||| || |||||||| |||||||| || || | Sbjct 32357 CCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAG 32298 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || |||||||| | ||||| || |||||||| || || Sbjct 32297 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGG 32238 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | ||||| |||| | ||| || || |||| || Sbjct 32237 ATGCCTTCCTTATCTTG-AATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGAC 32179 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||||||||| || || || || |||||||| Sbjct 32178 CTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| ||||||||||| || || || || || || || || ||||| | | Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || | |||||| ||||| | || | | ||| |||||||| ||| Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| |||||| | || ||| |||| | || || || | || || Sbjct 32009 ATTCCTTCTTTGTCTTG-AATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAAC 31951 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || || || || ||||| || || |||||||| Sbjct 31950 CTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 >seq8521 Length=40141 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||| || || ||||||||||| || | | ||| || Sbjct 2234 ACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCC 2175 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || || || | ||||| || |||||||| || || ||||| || || Sbjct 2174 ATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTT 2115 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || ||| ||| | || | |||||||| | || || || || || || Sbjct 2114 ATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGAT 2055 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 2054 TGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384896034075594