Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq785 165 1e-35 >seq785 Length=396209 Score = 165 bits (182), Expect = 1e-35 Identities = 524/805 (65%), Gaps = 22/805 (3%) Strand=Plus/Minus Query 187031 GGCGATATTCATTTTCATGACCTTGACTACAGCCCATTATTCCCGCAATTCAACTGTATG 187090 ||||| || |||| ||||||||| || || ||| || |||||| || ||||| ||| Sbjct 143027 GGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTAACTGCATG 142968 Query 187091 CTTATTGATATCAAAGGCATGTTTGAAGGCGGTTTCAAAATGGGTAATGCTGAAATCGAA 187150 || || || | ||||||||||| | ||||||||||||||||||||| ||||| || Sbjct 142967 CTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCGGAAATTGAC 142908 Query 187151 GAACCAAACAGTATTAGCACTGCTGCCACTGTTGTAACTCAGATTATTCAGCAAGTAAGT 187210 ||||| |||| ||| || | | || | |||||||| ||| || Sbjct 142907 ACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCGCAGGTCGCC 142848 Query 187211 AGCCATATCTACGGCGGTAACACGATCAATAGAATCGACGAAGTCCTAGCACCTTATGTT 187270 |||||||| |||||||| | || || || | ||||||||||| || || || ||| Sbjct 142847 AGCCATATTTACGGCGGCACGACCATTAACCGCATCGACGAAGTACTGGCGCC----GTT 142792 Query 187271 CGTAA--GTCATATT--ATAAATGGCTCGAAGTAGGTCGCGAAGAACATCCCGACTCTGA 187326 ||| | | || || ||||| ||| | | |||||| | | || Sbjct 142791 CGTCACCGCCAGCTTCAATAAACA--TCGTCAGACTGC-CGAAGA-------GTGGCAGA 142742 Query 187327 TTCTAAA-GCTGCTATCTTTGCACGAAAGCGTGTTGAAAAGGAAACGTTCGATGCATTCC 187385 || | | || | | |||||| | | ||| ||||| || | || || |||| Sbjct 142741 TTGCAGATGCGGATGGCTTTGCTCACAGCCGTACCGAAAAAGAGTGTTATGACGCCTTCC 142682 Query 187386 AGACGTTTGAATATCAAGTCAATACGATGCAGACTTCAAACGGTCAGACACCATTCACGA 187445 || || | |||||| | || |||||| |||| || | ||||| ||||| || || | Sbjct 142681 AGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCCGTTTGTCA 142622 Query 187446 CAATCAACTTCGGGTTAGGTACGTCGTGGGAAGAAAAACTTATTCAAAAAAGTATTCTTC 187505 | || || || | || || || |||||| || || || || ||||| | Sbjct 142621 CCTTCGGTTTTGGCCTCGGCACATCCTGGGAATCGCGCCTGATCCAGCAATCAATTCTGC 142562 Query 187506 AGAATCGTATTGCAGGTCTAGGTAAGACTAAGAAAACTGCTATTTTCCCTAAGCTTGTTT 187565 || || ||||| || || || || | | ||||| ||| | ||||| || || || | Sbjct 142561 GTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCCAAAACTGGTGT 142502 Query 187566 TCACATTGAGAGACGGCGTGAACCTAAAAGAAGGCGACCCGTGCTACGCCATCAAAAAGT 187625 | | | | |||||| |||| | |||| || ||| | ||||| |||||| | Sbjct 142501 TTGCCATCCGTGACGGCCTGAATCATAAAGCCGGTGACGCCAACTACGACATCAAGCAAC 142442 Query 187626 TAGCTCTTGAATGTGCAAGTAAGCGTATGTACCCAGACATTTTGAACTATGACAAACTAG 187685 | || || ||||| || || |||||||||||||| ||||| | || ||||| | | | Sbjct 142441 TGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCAATTATGATCAGGTGG 142382 Query 187686 TTGAAACGACTGGTGGGTTTAAGTCTCCAATGGGCTGTCGCTCATTCTTGGGTGACTGGA 187745 | || || ||| ||| || | || |||||||| ||| ||| |||| | || | Sbjct 142381 TGAAAGTCACAGGTTCGTTCAAAACGCCGATGGGCTGCCGCAGTTTCCTGGGCG--TGTA 142324 Query 187746 AGAACGAAGATGGTGAAACGGTATTCGATGGTCGTAATAACTTAGGCGTCGTCTCAATCA 187805 ||| ||| |||| || | | | ||| || || ||||| | ||||| || | | Sbjct 142323 TGAA-GAAAATGGCGAGATGATCCACGAGGGCCGCAATAATATCGGCGTGATCAGCCTGA 142265 Query 187806 ATATCCCGCGTATTGCTATTGAAGC 187830 || | ||||||||||| | ||||| Sbjct 142264 ATCTGCCGCGTATTGCGCTGGAAGC 142240 Score = 107 bits (118), Expect = 3e-18 Identities = 201/292 (69%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 188168 TGGAAAGAACTGACGGGCTACGGTTTCAGTCTGTACAGTACACCAAGTGAATCGCTGTGT 188227 |||||||| ||||||||||||||||| |||||||| || || || ||| ||||| Sbjct 141905 TGGAAAGACGAAACGGGCTACGGTTTCAGCCTGTACAGCACGCCGAGCGAAAACCTGTGC 141846 Query 188228 GATCGTTTCTGTCGTCTCGACCAAGAGAAATACGGTGTCATTACAGGTATCAATGACAAA 188287 || || ||||||||||| || ||| ||| ||| | | | ||| | | ||| ||| Sbjct 141845 GACCGCTTCTGTCGTCTGGATAAAGCCGAATTCGGGCTGGTGGCCGGTGTGACTGATAAA 141786 Query 188288 GACTATTACACAAACTCGTTTCACTTAGACGTGTTCAAGAAAGTTAACCCATTTGAGAAA 188347 | || ||||| ||| || || | ||||| ||||| || || || | || ||| Sbjct 141785 GGTTACTACACCAACAGCTTCCATCTGGACGTCGAGAAGAAGGTAAATCCGTACGAAAAA 141726 Query 188348 ATTGATTTTGAA--GCTGCATACCCAATTCATGCAAACGGTGGTTTCATCTGTTATGCTG 188405 | || || ||| || | || | | | ||| || ||||| ||||||||||| |||| | Sbjct 141725 CTCGACTTCGAAGCGCCGTATCCGCCACTCA-GC-AACGGCGGTTTCATCTGCTATGGCG 141668 Query 188406 AGTTCCCGAATATGCGAGATAACATCAAAGGTCTAGAGCGCGTATGGGATTA 188457 | | ||| || ||| | | || | |||| || || ||| |||||||| Sbjct 141667 AATACCCTAACCTGCAACACAATCTGAAAGCGCTGGAAGACGTGTGGGATTA 141616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789476929335360