Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq785 291 1e-73 >seq785 Length=396209 Score = 291 bits (322), Expect = 1e-73 Identities = 739/1103 (67%), Gaps = 42/1103 (4%) Strand=Plus/Plus Query 27946 ATATCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAGCG 28005 |||||||| || | ||||| || ||||| || |||||||| | ||| || || || || Sbjct 142072 ATATCGTCGTCAGCTTTCAGGCGCACACCGCACGCACCTTCCATGTACAGGATTGGCGCC 142131 Query 28006 ACGCTGGCTTTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGATT 28065 |||| |||||| | ||| |||||| ||| ||| | ||||| |||| ||| | | Sbjct 142132 ACGCGGGCTTTGATGCCTTCCAGACGTGCAATGCGGGTCATCAGCGCTTTCTTCGCCAGC 142191 Query 28066 TCCATACGTTCTTCCAGAAGATCCCAGAAA--CGCATAGGATTGCCATTTGAATCAAGAG 28123 || ||| || || || || ||||||| ||| | | | || || | || || | Sbjct 142192 AGCAAACGCTCGTCGAGCAGTGCCCAGAACGCCGCTTCG--TCGCGGTTCGCTTCCAGCG 142249 Query 28124 CGATTCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAA-CTTCA 28182 | || ||||||| ||||| ||| ||| || | || || ||||| || || | | || Sbjct 142250 CAATACGCGGCAGATTCAGGCTGATCACGCCGATATTATTGCGGCCCTCGTGGATCATCT 142309 Query 28183 ACACCGTTTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAA 28242 | || ||||| || | | || || |||||| ||||| ||||| || |||||| Sbjct 142310 -CGCCATTTTCTTCATACACGCC---CAGGAAACTGCGGCAGCCCATCGGCGTTTTGAAC 142365 Query 28243 CTACCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCA 28302 ||| || |||| || | || |||||| | || |||||||| |||||||| || Sbjct 142366 GAACCTGTGACTTTCACCACCTGATCATAATTGAGGATGTCCGGGTACATACGCTTGCTG 142425 Query 28303 GCGCATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAG-TTGTG 28361 ||||||||||| |||| || ||||| || | ||| ||| || | | || | Sbjct 142426 GCGCATTCCAGTGCCAGTTGCTTGATGTCGTAGTTGGCGTCAC-CGGCTTTATGATTCAG 142484 Query 28362 TCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAG 28421 ||||| | || || |||||||| ||||| |||| ||| | | | ||| || || Sbjct 142485 GCCGTCACGGATGGCAAACACCAGTTTTGGGAATACAGCGGTTTTGCGATTTTTGCCCAG 142544 Query 28422 ACCAGCCAAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTACC 28481 || || | || ||| |||| || || ||||| || |||||| || || Sbjct 142545 TCCGGCAATGCGGTTACGCAGAATTGATTGCTGGATCAGGCGCGATTCCCAGGATGTGCC 142604 Query 28482 AAGACCAAAGCCGAAGGT-ACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGA 28540 || ||||| |||||||| ||| ||||| || || || || |||| |||||| || || | Sbjct 142605 GAGGCCAAAACCGAAGGTGACA-AACGGCGTCTGGCCGTTGGCGGTGTGCAGCGTATTAA 142663 Query 28541 CCTCATACTCCAGACCTTGCATAGCATCATAT-ACAGCTTTGCGA---GTCTTTG--CAA 28594 ||||||| ||||| || | || ||||| || ||| || | || || ||| Sbjct 142664 CCTCATATTCCAGCGACTGGAAGGCGTCATAACACTCTTTTTCGGTACGGCTGTGAGCAA 142723 Query 28595 TAGCATATTGCTGTTG--ATCTGGAATT-TTC--CAGTA--ACGAGCTTCATCCAAGTGC 28647 ||| || || ||||| | | ||| |||| |||| || || ||| Sbjct 142724 AGCCATCC-GCATCTGCAATCTGCCACTCTTCGGCAGTCTGACGATGTTTATTGAAGC-- 142780 Query 28648 TTTTCGTGTGTCATTTTAACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTA 28707 | || ||| || |||| ||||| |||||||| ||||| || || || | Sbjct 142781 -TGGCG-GTG--------ACGAACGGCGCCAGTACTTCGTCGATGCGGTTAATGGTCGTG 142830 Query 28708 CCGCCATAAATGTGACTTGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTA 28767 ||||| ||||| || || || || || ||||| || || || | ||||| | ||||| Sbjct 142831 CCGCCGTAAATATGGCTGGCGACCTGCGCGATAATCTGCGCGGTGACGGCCGTTGCGGTG 142890 Query 28768 GAAATGCTTTTCGGAGTCTCGATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATT 28827 ||||| || || || || |||| |||||||||||| ||||||| | |||||||| Sbjct 142891 GAAATAGACTTTGGCGTGTCAATTTCCGCATTACCCATTTTGAAACCGTGATTCAACATG 142950 Query 28828 CCTTCAACATCTATCAACATGCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCG 28887 |||| || || |||| ||||||||||||||| ||||||||||| |||||||| || || Sbjct 142951 CCTTTAAGGTCGATCAGCATGCAGTTAAACATCGGGAAGAACGGGGAATAATCGAGGTCA 143010 Query 28888 TGGAAGTGAATCCAACCATTTTCGTGTGCTTGCATAACTTCAACAGGCAGATAATGC--- 28944 || | || || ||| || || || ||| || ||| || | | |||| Sbjct 143011 TGATAATGGATTTCGCCACGCTCATGCGCCAGCACGACATCACGCGGTAAAATATGCTGT 143070 Query 28945 TTGGCGAAATGCTTACTAACGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTG 29004 |||||| ||||||| || ||||| || | || || || || || || || || ||| Sbjct 143071 TTGGCGTAATGCTTGGCGACAATACCCGCCAGCAGGTCACGCTGGGTCGGGATCACTTTG 143130 Query 29005 GCGTCTTTGTTTGCATTTTCATT 29027 ||||||||| ||||| || || Sbjct 143131 CTGTCTTTGTTGGCATTCTCGTT 143153 Score = 152 bits (168), Expect = 7e-32 Identities = 285/416 (69%), Gaps = 2/416 (0%) Strand=Plus/Plus Query 27252 CAAATGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACC 27311 || |||||||| || | |||||| |||||||| ||||| ||||| | || | | | Sbjct 141378 CAGATGTTTAATCCGGCGCTTCACTTCTTCCTGCTTACCGGCGTTAAACGGACGGGCATC 141437 Query 27312 GGGGTTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATT 27371 ||| | || | |||||| || ||||| || | || || || | || ||||| Sbjct 141438 CGGGCTGCCGAGATAACCACACACGCGGCGGGTGACTGACACGCGGGAAGGTTCGTGATT 141497 Query 27372 GCCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGT-GAATTCGCCGTGATAACCGC 27430 |||||| || ||||| | ||||||| | || ||| | |||||||||| ||| |||| Sbjct 141498 GCCGCATTTCGGACAGGTAAATCCTTT-GCTGGTGCATTCGAATTCGCCGGTATAGCCGC 141556 Query 27431 ATTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCAT 27490 | || | || |||| | ||| || ||||| || |||||||| ||||| | Sbjct 141557 AGTCGTAGCATTCATCGATTGGCGTGTTGGTGCCGTAATACGGCACGCGGGTATAACTGT 141616 Query 27491 AATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATG 27550 ||||||| || ||||| || ||||||||||| | || || || || ||||| || || Sbjct 141617 AATCCCACACGTCTTCCAGCGCTTTCAGATTGTGTTGCAGGTTAGGGTATTCGCCATAGC 141676 Query 27551 AAATAAAACCACCAGAACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACG 27610 | || ||||| || || || || | || ||| || |||| || || |||| Sbjct 141677 AGATGAAACCGCCGTTGCTGAGTGGCGGATACGGCGCTTCGAAGTCGAGTTTTTCGTACG 141736 Query 27611 GATTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATCA 27666 ||||| || | |||||||||||||| |||||||| || ||| | |||||| Sbjct 141737 GATTTACCTTCTTCTCGACGTCCAGATGGAAGCTGTTGGTGTAGTAACCTTTATCA 141792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709680047694240