Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_023688.1
Length=222006
Score E
Sequences producing significant alignments: (Bits) Value
seq785 291 1e-73
>seq785
Length=396209
Score = 291 bits (322), Expect = 1e-73
Identities = 739/1103 (67%), Gaps = 42/1103 (4%)
Strand=Plus/Plus
Query 27946 ATATCGTCATCTGGGTTCAGACGAACACCACAAGCACCTTCAACGTAAAGAATCGGAGCG 28005
|||||||| || | ||||| || ||||| || |||||||| | ||| || || || ||
Sbjct 142072 ATATCGTCGTCAGCTTTCAGGCGCACACCGCACGCACCTTCCATGTACAGGATTGGCGCC 142131
Query 28006 ACGCTGGCTTTAACGCCACGCAGACGATCAACGCGAGCCATCAAAGCTTGCTTGGTGATT 28065
|||| |||||| | ||| |||||| ||| ||| | ||||| |||| ||| | |
Sbjct 142132 ACGCGGGCTTTGATGCCTTCCAGACGTGCAATGCGGGTCATCAGCGCTTTCTTCGCCAGC 142191
Query 28066 TCCATACGTTCTTCCAGAAGATCCCAGAAA--CGCATAGGATTGCCATTTGAATCAAGAG 28123
|| ||| || || || || ||||||| ||| | | | || || | || || |
Sbjct 142192 AGCAAACGCTCGTCGAGCAGTGCCCAGAACGCCGCTTCG--TCGCGGTTCGCTTCCAGCG 142249
Query 28124 CGATTCGCGGCAAGTTCAGAGTGACCACACCCAAGTTGTTACGGCCTTCATGAA-CTTCA 28182
| || ||||||| ||||| ||| ||| || | || || ||||| || || | | ||
Sbjct 142250 CAATACGCGGCAGATTCAGGCTGATCACGCCGATATTATTGCGGCCCTCGTGGATCATCT 142309
Query 28183 ACACCGTTTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATTGGGAATTTGAAA 28242
| || ||||| || | | || || |||||| ||||| ||||| || ||||||
Sbjct 142310 -CGCCATTTTCTTCATACACGCC---CAGGAAACTGCGGCAGCCCATCGGCGTTTTGAAC 142365
Query 28243 CTACCAGTCACTTCAACGATCTTATCATAGCTCAGAATGTCCGGATACATACGTTTCGCA 28302
||| || |||| || | || |||||| | || |||||||| |||||||| ||
Sbjct 142366 GAACCTGTGACTTTCACCACCTGATCATAATTGAGGATGTCCGGGTACATACGCTTGCTG 142425
Query 28303 GCGCATTCCAGAGCCAACTGTTTGATACGATACAGCGGATCAGTCGGGTTCAAG-TTGTG 28361
||||||||||| |||| || ||||| || | ||| ||| || | | || |
Sbjct 142426 GCGCATTCCAGTGCCAGTTGCTTGATGTCGTAGTTGGCGTCAC-CGGCTTTATGATTCAG 142484
Query 28362 TCCGTCTTTCAGAGCGAATACCAGTTTCGGGAAAACAGGGGTGATACCCTCTTTACCAAG 28421
||||| | || || |||||||| ||||| |||| ||| | | | ||| || ||
Sbjct 142485 GCCGTCACGGATGGCAAACACCAGTTTTGGGAATACAGCGGTTTTGCGATTTTTGCCCAG 142544
Query 28422 ACCAGCCAAACGAACTTTCAGGATTGCTTCTTGAATCAGTTCTGACTCCCAGCTAGTACC 28481
|| || | || ||| |||| || || ||||| || |||||| || ||
Sbjct 142545 TCCGGCAATGCGGTTACGCAGAATTGATTGCTGGATCAGGCGCGATTCCCAGGATGTGCC 142604
Query 28482 AAGACCAAAGCCGAAGGT-ACAGAACGGAGTTTGACCATTTGCGGAGTGCAGAGTGTTGA 28540
|| ||||| |||||||| ||| ||||| || || || || |||| |||||| || || |
Sbjct 142605 GAGGCCAAAACCGAAGGTGACA-AACGGCGTCTGGCCGTTGGCGGTGTGCAGCGTATTAA 142663
Query 28541 CCTCATACTCCAGACCTTGCATAGCATCATAT-ACAGCTTTGCGA---GTCTTTG--CAA 28594
||||||| ||||| || | || ||||| || ||| || | || || |||
Sbjct 142664 CCTCATATTCCAGCGACTGGAAGGCGTCATAACACTCTTTTTCGGTACGGCTGTGAGCAA 142723
Query 28595 TAGCATATTGCTGTTG--ATCTGGAATT-TTC--CAGTA--ACGAGCTTCATCCAAGTGC 28647
||| || || ||||| | | ||| |||| |||| || || |||
Sbjct 142724 AGCCATCC-GCATCTGCAATCTGCCACTCTTCGGCAGTCTGACGATGTTTATTGAAGC-- 142780
Query 28648 TTTTCGTGTGTCATTTTAACATACGGTGCCAGCACTTCGTCAATGCGATTGATTGTGTTA 28707
| || ||| || |||| ||||| |||||||| ||||| || || || |
Sbjct 142781 -TGGCG-GTG--------ACGAACGGCGCCAGTACTTCGTCGATGCGGTTAATGGTCGTG 142830
Query 28708 CCGCCATAAATGTGACTTGCTACTTGAGCGATGATTTGAGCAATCACGGCAGCAGCGGTA 28767
||||| ||||| || || || || || ||||| || || || | ||||| | |||||
Sbjct 142831 CCGCCGTAAATATGGCTGGCGACCTGCGCGATAATCTGCGCGGTGACGGCCGTTGCGGTG 142890
Query 28768 GAAATGCTTTTCGGAGTCTCGATTTGAGCATTACCCATTCTGAAACCACGTTTCAACATT 28827
||||| || || || || |||| |||||||||||| ||||||| | ||||||||
Sbjct 142891 GAAATAGACTTTGGCGTGTCAATTTCCGCATTACCCATTTTGAAACCGTGATTCAACATG 142950
Query 28828 CCTTCAACATCTATCAACATGCAGTTAAACATTGGGAAGAACGGTGAATAATCAAGATCG 28887
|||| || || |||| ||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 142951 CCTTTAAGGTCGATCAGCATGCAGTTAAACATCGGGAAGAACGGGGAATAATCGAGGTCA 143010
Query 28888 TGGAAGTGAATCCAACCATTTTCGTGTGCTTGCATAACTTCAACAGGCAGATAATGC--- 28944
|| | || || ||| || || || ||| || ||| || | | ||||
Sbjct 143011 TGATAATGGATTTCGCCACGCTCATGCGCCAGCACGACATCACGCGGTAAAATATGCTGT 143070
Query 28945 TTGGCGAAATGCTTACTAACGATACCAGCTACCAAATCGCGTTGAGTTGGAATTACCTTG 29004
|||||| ||||||| || ||||| || | || || || || || || || || |||
Sbjct 143071 TTGGCGTAATGCTTGGCGACAATACCCGCCAGCAGGTCACGCTGGGTCGGGATCACTTTG 143130
Query 29005 GCGTCTTTGTTTGCATTTTCATT 29027
||||||||| ||||| || ||
Sbjct 143131 CTGTCTTTGTTGGCATTCTCGTT 143153
Score = 152 bits (168), Expect = 7e-32
Identities = 285/416 (69%), Gaps = 2/416 (0%)
Strand=Plus/Plus
Query 27252 CAAATGTTTAACACGTTTTTGCACTTCGTCCTGCTTGCCGGCATTAAATGCGCGAGAACC 27311
|| |||||||| || | |||||| |||||||| ||||| ||||| | || | | |
Sbjct 141378 CAGATGTTTAATCCGGCGCTTCACTTCTTCCTGCTTACCGGCGTTAAACGGACGGGCATC 141437
Query 27312 GGGGTTCCCCAAATAACCGCAGACGCGACGAATAACGTTCATTTTGGTATCATCATGATT 27371
||| | || | |||||| || ||||| || | || || || | || |||||
Sbjct 141438 CGGGCTGCCGAGATAACCACACACGCGGCGGGTGACTGACACGCGGGAAGGTTCGTGATT 141497
Query 27372 GCCGCACTTAGGACATTCATATCCTTTAGATGTAGCAGT-GAATTCGCCGTGATAACCGC 27430
|||||| || ||||| | ||||||| | || ||| | |||||||||| ||| ||||
Sbjct 141498 GCCGCATTTCGGACAGGTAAATCCTTT-GCTGGTGCATTCGAATTCGCCGGTATAGCCGC 141556
Query 27431 ATTCAAAACAAACATCAACTGGGGTATTGGTCCCATAATACGGGGTATTCCTATAAGCAT 27490
| || | || |||| | ||| || ||||| || |||||||| ||||| |
Sbjct 141557 AGTCGTAGCATTCATCGATTGGCGTGTTGGTGCCGTAATACGGCACGCGGGTATAACTGT 141616
Query 27491 AATCCCAAACATCTTCGAGAGCTTTCAGATTATCTTTCATATTCGGATATTCACCGTATG 27550
||||||| || ||||| || ||||||||||| | || || || || ||||| || ||
Sbjct 141617 AATCCCACACGTCTTCCAGCGCTTTCAGATTGTGTTGCAGGTTAGGGTATTCGCCATAGC 141676
Query 27551 AAATAAAACCACCAGAACTAAGCGGAATGAATTGCTTTTCAAAATCGATCTTGTCATACG 27610
| || ||||| || || || || | || ||| || |||| || || ||||
Sbjct 141677 AGATGAAACCGCCGTTGCTGAGTGGCGGATACGGCGCTTCGAAGTCGAGTTTTTCGTACG 141736
Query 27611 GATTTGTATTATGACGAACGTCCAGATGGAAACTGTTGGTATAATAATCCTTATCA 27666
||||| || | |||||||||||||| |||||||| || ||| | ||||||
Sbjct 141737 GATTTACCTTCTTCTCGACGTCCAGATGGAAGCTGTTGGTGTAGTAACCTTTATCA 141792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 709680047694240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |