Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8056 187 5e-42 seq48539 185 2e-41 seq15643 147 4e-30 seq8521 143 5e-29 seq4062 129 1e-24 >seq8056 Length=34938 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| || || || || || || || || ||||| ||||| ||||| || Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||||| |||||||||||| ||||| || | ||||||||| ||||| Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||||||| || || ||||||||||| |||||||| || || || Sbjct 32009 ATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACC 31950 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| || |||||||| || ||||| || || || || |||||||| ||| Sbjct 31949 TCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGATT 31899 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||||| || | || || |||||||||||||| || || || || | Sbjct 32359 TACCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGG 32300 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||| || || | || || |||||||| | Sbjct 32299 AGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGG 32240 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||||||||| || || || || |||||||| ||||| ||||| | Sbjct 32239 GGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGA 32180 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| || || ||||| || || |||||||| Sbjct 32179 CCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || |||||||| || || |||||||||||||||||||| || || ||||| ||||| || Sbjct 32480 TGCTGATCTGGTGGGATACCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTG 32421 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || || || ||||| | ||| || |||||||| ||||| ||||| || || |||||| Sbjct 32420 TCGGAGGGCTCCACTTCGAGAGTGATAGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGC 32361 Query 82809 AT 82810 || Sbjct 32360 AT 32359 >seq48539 Length=7100 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| || || ||||| || || ||||| || || ||||| ||||| || Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| |||||||| | || || ||||| || || || || || ||||||||||| Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || |||||||| ||||| || || |||||||||||||| ||| || || Sbjct 6365 ATACCTTCTTTGTCTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACC 6306 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||||||||||||| ||||| || || || || |||||||| Sbjct 6305 TCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || ||||||||||| || ||||| || || || Sbjct 6713 CCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAA 6654 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || | || ||||| || ||||| | || || ||||||||||| Sbjct 6653 AGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGG 6594 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| ||||| ||||||||||| || ||| ||| || ||| Sbjct 6593 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACT 6534 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | |||||||| || |||||||| Sbjct 6533 TCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || || || || || || || || || || || Sbjct 6941 CCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAA 6882 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | ||| ||||| |||||||| | || || |||||||| || Sbjct 6881 AGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGA 6822 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||||||||| || || ||||||||||| ||||| ||||| ||| Sbjct 6821 ATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACT 6762 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || || ||||| || | ||||| ||||| ||||||||| Sbjct 6761 TCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714 Score = 120 bits (132), Expect = 6e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| | || || |||||||| || || |||||| Sbjct 7100 CCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCC 7041 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| ||||| ||||| ||||||||||| ||||| || || || || | ||| Sbjct 7040 TTGTCTTGGATCTTGGCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGTGTT 6981 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || |||| ||||| || || || |||||| Sbjct 6980 ATGGTTTTACCAGTCAGAGTCTTGACGAAGATTTGCATT 6942 >seq15643 Length=27379 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||||| | || || |||||||| || || || || ||||| ||||| ||||| || Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGA 12215 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || |||||||| || ||||| | || || ||||||||||| Sbjct 12214 AAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || ||||| ||||| ||||| |||||||| || || ||| || ||||| Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTAC 12095 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || || | ||||| || || ||||||||| Sbjct 12094 CTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATT 12046 >seq8521 Length=40141 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| || || ||||| || ||||| |||| Sbjct 2247 TACCACCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAG 2188 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || ||||| || ||||| | || || |||||||| | Sbjct 2187 AGAGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGG 2128 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| ||||| ||||| ||||| || ||| || || | Sbjct 2127 GGATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAA 2068 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || |||||||| Sbjct 2067 CCTCTAGGGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Score = 141 bits (156), Expect = 2e-28 Identities = 131/166 (79%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||| || || ||||| || |||||||| ||||| || || || |||| Sbjct 2019 TACCTCCTCGGAGACGGAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAG 1960 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| ||||| || ||||||||||| | || || |||||||| | Sbjct 1959 AGAGGGTACGACCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGG 1900 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 | || |||||||| ||||| ||||| ||||| ||||||||||| || Sbjct 1899 GAATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATGGT 1854 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || ||||| || || || ||||| || || || || || || Sbjct 2929 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAA 2870 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | ||| ||||| |||||||| | || || |||||||| || Sbjct 2869 AGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGG 2810 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| ||||| ||||| ||||| || || || || || Sbjct 2809 ATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACC 2750 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || |||| || || ||||| |||||||| Sbjct 2749 TCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || || |||||||| || || |||||||| ||||| ||||| ||||| ||||||||||| Sbjct 3055 CTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATG 2996 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 ||||| || || || || | ||||| |||||||| |||| ||||| || || ||| Sbjct 2995 GTATCTGAGGGCTCAACCTCGAGTGTTATGGTCTTGCCAGTCAGGGTCTTGACGAAGATC 2936 Query 82806 TGCATT 82811 |||||| Sbjct 2935 TGCATT 2930 >seq4062 Length=67394 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||| || || || || ||||| || || || || || || | || || || Sbjct 48376 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTCCTGCCATC 48317 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| || || || || || ||||| || || || || ||||| || |||||||||||||| Sbjct 48316 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTATC 48257 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 ||| ||||| || || |||| ||| || || ||| ||| || || || | || || || Sbjct 48256 TTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGGGTGATAGT 48197 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||||| || | ||||| || || |||||||| || Sbjct 48196 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 48161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980961291614726