Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq11224 95.1 2e-14 seq7028 95.1 2e-14 seq205 89.7 7e-13 seq1417 84.2 3e-11 >seq11224 Length=41968 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 15949 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15890 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 15889 CCCGCCGGGGAG 15878 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 15949 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15890 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 15889 CCCGCCGGGGAG 15878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 15878 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 15937 Query 139413 TACTAACGAGGAT 139425 ||||| ||||||| Sbjct 15938 TACTACCGAGGAT 15950 >seq7028 Length=60819 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 47051 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 47110 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 47111 CCCGCCGGGGAG 47122 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 47051 TCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 47110 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 47111 CCCGCCGGGGAGG 47123 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 47122 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 47063 Query 139413 TACTAACGAGGAT 139425 ||||| ||||||| Sbjct 47062 TACTACCGAGGAT 47050 >seq205 Length=216154 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||| ||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 118895 TCCTCGGTAGTATGGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 118954 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 118955 CCCGCCGGGGAG 118966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||| |||||| |||| |||| ||||| | |||||||||||||||||||| Sbjct 118894 GTCCTCGGTAGTATGGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 118953 Query 11788 CCCCGACGAGGAG 11800 ||||| || |||| Sbjct 118954 CCCCGCCGGGGAG 118966 >seq1417 Length=110962 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 8646 CCGATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACC 8705 ||||||| ||| | || |||||||||||| ||||| |||| ||||| | ||||||||| Sbjct 65693 CCGATGCAGTAT-CTTCAGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACC 65751 Query 8706 GGGGTTCGATTCCCCG 8721 |||||||||||||||| Sbjct 65752 GGGGTTCGATTCCCCG 65767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652283076012960