Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_024793.1 Length=46847 Score E Sequences producing significant alignments: (Bits) Value seq725 91.5 4e-14 >seq725 Length=236385 Score = 91.5 bits (100), Expect = 4e-14 Identities = 175/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 18602 CGTGTGCCGACAAACTACAATCCAGAGACAAGGACTTATAGCGGCACATGGGATGGCACC 18661 || || ||||||| ||| | || | || || ||||| |||||| |||||||| || Sbjct 215404 CGCGTTCCGACAACTTACGACCCTGTCACCCGGTCTTATTCCGGCACTTGGGATGGAACG 215463 Query 18662 TTTAAGATGGCATGGTCTGACAATCCTGCCTGGGTTTTATATGACCTGGTGGTTAGTCAG 18721 ||||| ||| ||| | || || || | ||| |||| |||||| | || || | | | Sbjct 215464 TTTAAATGGGCGTGGACCGATAACCCGTCGTGGATTTTCTATGACATCGTCGTGAATAAC 215523 Query 18722 CGTTATGGTTTAGATCAGCGTGAACTTGGTGTAGAGATTGATAAGTGGGGTCTGTATGAA 18781 || | |||| | | ||||| || || | || |||||||||| || || Sbjct 215524 CGCTTTGGTCTCGGCCAGCGGCTCACTGCTGACAATATCGATAAGTGGGAGCTTTACCGC 215583 Query 18782 GCTGCGCAATTCTGTGACCAAATGGTGCCAGATGG--GAAGG----GTGGAATGGAGCCG 18835 | |||||| |||||||||||||||||| || || | || |||||| ||||| Sbjct 215584 GTCTCGCAATACTGTGACCAAATGGTGCCGGACGGCCGCGGGGGAAGTGGAACCGAGCCT 215643 Query 18836 CGTTACACTTGCAACGT 18852 ||||| | |||||| || Sbjct 215644 CGTTATATTTGCAATGT 215660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149666362073172