Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq8521 118 7e-22 seq48539 113 3e-20 seq8056 100 2e-16 seq15643 87.8 1e-12 >seq8521 Length=40141 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || || || ||||||||| |||||||| ||||| Sbjct 2929 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAA 2870 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||||||| ||||| ||||| ||||| | |||||||||| | || Sbjct 2869 AGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGG 2810 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | |||||| || || || || ||||| ||| ||| ||||| | || || Sbjct 2809 ATACCTTCCTTATCCTGGATCTTGGCTTTCA-CATTCTCAATTGTGTCTGAGGGCTCAAC 2751 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||||| ||||||||||||||| Sbjct 2750 CTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCATA 2702 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||| || | ||| || ||| ||| || || |||||||| ||||| Sbjct 2474 ACCACCACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 2415 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | || ||||||||||| ||||| | |||||||||| | || Sbjct 2414 GAGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGG 2355 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| ||||| | | |||| || | |||| | ||| | Sbjct 2354 GATACCTTCCTTGTCCTGGATTTT-GGCCTTGACATTCTCAATACTGTCCGAGGGTTCAA 2296 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || ||||||||||||||| Sbjct 2295 CCTCCAGTGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 2246 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | ||| || || |||||| || |||||||| || || Sbjct 2702 ACCACCACGCAGACGAAGGACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGA 2643 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || |||| || |||||||| || ||||| | |||||||||| | || Sbjct 2642 AAGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGG 2583 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || || ||||| || | ||||||| | || | Sbjct 2582 AATACCTTCCTTGTCTTGGATCTTGGCCTT-AACATTCTCTATGGTGTCGGAGGGCTCAA 2524 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 2523 CCTCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGACGAAGATCTGCATA 2474 >seq48539 Length=7100 Score = 113 bits (124), Expect = 3e-20 Identities = 169/236 (72%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||||| || || ||| || ||||| || |||||||||||| Sbjct 6485 CCTCCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAG 6426 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| ||||| || || || || ||||||| | |||||||||| | || Sbjct 6425 AGGGTTCGGCCGTCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 6366 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| |||||| || | || | || | || ||| | ||||| Sbjct 6365 ATACCTTCTTTGTCTTGAATTTT-TGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCAC 6307 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || | || ||||| || || || || ||||| || || |||||||| |||| || Sbjct 6306 CTCCAAAGTTATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT-GTTGTTG 6252 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || ||| | ||||| || || || |||||||| || Sbjct 6725 AAAATCTGCATTCCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATA 6666 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| ||||| || |||||| | || ||||| || ||||| || || ||||| | |||| Sbjct 6665 TTGTAGTCGGAAAGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGC 6606 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTC 33689 |||||| | || | ||||| ||||| || || ||| | ||| ||| ||||| Sbjct 6605 TGATCTGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGA-CATTTTCAATTGTGTC 6547 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | || || || || || || | || ||||| ||||||||||| Sbjct 6546 AGAAGGCTCAACTTCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 >seq8056 Length=34938 Score = 100 bits (110), Expect = 2e-16 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | ||||||||| || || ||| || || || ||||||||||| Sbjct 32129 CCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAA 32070 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || ||||||||||| || || || | ||| || ||||| | || Sbjct 32069 AGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGA 32010 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||||| | | |||| || | || || | || || Sbjct 32009 ATTCCTTCTTTGTCTTGAATTTTC-GCCTTTACATTTTCGATCGTATCTGAGGGCTCAAC 31951 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGT 33760 || | |||||||| || || || || ||||| || || |||||||| ||| | ||| Sbjct 31950 CTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATGATTGATCTGT 31892 >seq15643 Length=27379 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| | || | ||| || || || ||| ||| || || || |||||||| || Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGA 12215 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | ||||||||||| || ||||| | |||||||||| | || Sbjct 12214 AAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGG 12155 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || || | || |||| || | ||||| | || | Sbjct 12154 GATTCCTTCTTTGTCTTGGATCTT-GGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTA 12096 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | |||| ||||| ||||| || || | || || || || |||||||| || Sbjct 12095 CCTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATTGT 12044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328428245489280