Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4062 129 1e-24 seq8056 114 3e-20 seq48539 105 2e-17 seq15643 93.3 1e-13 seq8521 93.3 1e-13 >seq4062 Length=67394 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || ||||| ||||||||| ||||| Sbjct 48179 AAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGCCTTCTGACACCATCGAACAT 48238 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || |||||||| || ||| || || || |||||| Sbjct 48239 GTCAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCAGCAGAGGCTGATCTTC 48298 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| ||||| | | || |||||| ||||||| ||||| Sbjct 48299 GCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCGGACTACAACATCCAGAAGGAGTCC 48358 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || |||| ||||| Sbjct 48359 ACCCTCCACCTGGTGCTGAGGCTTCG 48384 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| |||| || ||||| || || ||||| ||||||| || ||||| | | ||| Sbjct 48384 CGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTC 48325 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 || ||||||||||||||||| ||||||||||| |||| Sbjct 48324 CTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCC 48288 >seq8056 Length=34938 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || ||||| |||||||| ||||| || || || || || ||||| Sbjct 31918 AAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCAGATACGATCGAAAAT 31977 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| |||||||||||| ||||| ||| | ||||||||| Sbjct 31978 GTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAACAACGTCTTATCTTC 32037 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || || |||||||| | || | |||||||||| ||||||| ||||| Sbjct 32038 GCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAATATCCAGAAGGAGTCG 32097 Query 206365 ACTCTTCA 206372 || || || Sbjct 32098 ACCCTCCA 32105 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| |||| || ||| || || Sbjct 32134 CAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTCAGAT 32193 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || |||||||| || ||||| || || || || Sbjct 32194 ACTATTGAAAACGTCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCAGCAG 32253 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || ||||| || |||||| ||||||||||| | || | |||| |||||| | Sbjct 32254 AGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAACATT 32313 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| ||||| ||||| ||||| ||| | || ||| Sbjct 32314 CAGAAAGAATCTACCCTTCATCTTGTATTGCGTCTCCGA 32352 >seq48539 Length=7100 Score = 105 bits (116), Expect = 2e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || || ||| | ||||| || |||||||||| | ||| Sbjct 6502 AAGACCCTTACCGGAAAGACTATTACTCTAGAAGTTGAGCCTTCTGACACAATTGAAAAT 6561 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || |||||||| || || || || | ||||| Sbjct 6562 GTCAAAGCCAA-GATCCAAGACAAGGAAGGAATCCCTCCAGATCAGCAGAGGTTGATCTT 6620 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| |||||||||||||| |||||| | || | |||| ||||| |||| ||||| || Sbjct 6621 CGCAGGAAAGCAGTTGGAGGATGGACGCACCCTTTCCGACTACAATATCCAAAAAGAATC 6680 Query 206364 TACTCTTCAC 206373 ||| |||||| Sbjct 6681 TACCCTTCAC 6690 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || ||||| ||||| |||||||| ||| || || Sbjct 6718 CAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTCAGAT 6777 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||||||| || || || Sbjct 6778 ACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAGCAG 6837 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || |||||||| |||||||||||| | || | | || |||||| | Sbjct 6838 AGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAACATT 6897 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||| || |||||| Sbjct 6898 CAAAAGGAGTCAACCCTTCAC 6918 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || ||||| |||||||| ||||| ||| || || | ||| Sbjct 6274 AAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTCCGATACGATTGAAAAC 6333 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||| |||||||| |||||||| || || || || || || || ||| Sbjct 6334 GTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAGCAGAGGCTGATTTTC 6393 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||||||||||| || | || | |||||||||| |||| || || || Sbjct 6394 GCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAATATCCAAAAGGAATCC 6453 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 6454 ACCCTCCAC 6462 >seq15643 Length=27379 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| | || || || |||||||| ||||| Sbjct 12062 AAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCCTCTGACACTATCGAAAAT 12121 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| ||||||||||| || || || || | ||||| Sbjct 12122 GTCAAAGCCAA-GATCCAAGACAAAGAAGGAATCCCTCCAGATCAGCAGAGGTTGATCTT 12180 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||||||| ||| | || |||||| | || | | |||||||| ||||||| ||||| Sbjct 12181 CGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTACAATATCCAGAAGGAGTC 12240 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || | |||| ||| Sbjct 12241 CACACTTCACTTAGTGCTTCGACTCCGA 12268 >seq8521 Length=40141 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | || || || || ||| Sbjct 2478 CAGATCTTCGTCAAGACTCTGACTGGGAAGACAATCACCCTCGAGGTTGAGCCCTCCGAC 2537 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || ||||| ||| || || || Sbjct 2538 ACCATAGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAG 2597 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||||||||||||| ||||||||||| | || | | || |||||| || Sbjct 2598 AGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTTTCTGACTACAACATC 2657 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||||||| || || || || Sbjct 2658 CAGAAAGAGTCTACACTCCATCTCGT 2683 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||| ||||| ||||| | |||||||||| | || | ||||||||||||||| Sbjct 2222 GTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCTTCCAGCTG 2163 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||||||| | || || ||| Sbjct 2162 CTTTCCGGCGAAGATCAACCTCTGCTGA 2135 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || || || || |||||||||||||||| || ||||||| | || | |||||||||| Sbjct 2683 ACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCC 2624 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||||||||| | || || ||| Sbjct 2623 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGA 2591 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || || ||||| | || || || || ||| Sbjct 2706 CAGATCTTTGTCAAAACCCTGACCGGGAAGACCATCACCCTAGAGGTTGAGCCCTCAGAC 2765 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| || ||| || || || ||||| || || || || Sbjct 2766 ACAATTGAGAATGTGAAAGCCAA-GATCCAGGATAAGGAAGGTATCCCCCCAGATCAGCA 2824 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || |||||||| |||||||||||| | || | |||| |||||| | Sbjct 2825 GAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCCGACTACAACAT 2884 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||| || |||||| Sbjct 2885 CCAAAAAGAGTCGACCCTTCAC 2906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180778510134114