Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq828 163 3e-35 seq785 138 1e-27 seq35 116 4e-21 seq9405 102 9e-17 >seq828 Length=218660 Score = 163 bits (180), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 50982 CGTGAAGTTGATATTGAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAAC 51041 |||||||| || || |||| ||||| || || |||||||| |||||||| ||| Sbjct 42352 CGTGAAGTGCCAATGGAAGTTCAGCCGACCGTGCGCGTGGAAGGTGGTCAGCACCTGAAC 42293 Query 51042 GTGAATGTGCTACGTCGCGAAACCCTGAAAGATGCTGTGAAACATCCTGAGAAGTACCCA 51101 || || || || ||||| ||||| ||| ||||||| || |||||||||||||| |||||| Sbjct 42292 GTTAACGTACTGCGTCGTGAAACACTGGAAGATGCGGTTAAACATCCTGAGAAATACCCA 42233 Query 51102 CAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTCCAGAACAA 51161 ||| | || || || || || || ||||| || || || || |||||||| | ||||| Sbjct 42232 CAGCTGACTATTCGTGTGTCTGGCTATGCGGTACGTTTCAACTCACTGACTGCTGAACAG 42173 Query 51162 CAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATGTAAT 51204 ||||| ||||| || || | || || || |||||| |||||| Sbjct 42172 CAGCGTGACGTGATTACCCGTACTTTCACTGAAAGCCTGTAAT 42130 >seq785 Length=396209 Score = 138 bits (152), Expect = 1e-27 Identities = 756/1192 (63%), Gaps = 74/1192 (6%) Strand=Plus/Minus Query 154259 CAACGAGAACGCGAACAAAGAC-GCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGG 154317 ||||||||| || ||||||||| |||| | | ||||||| ||||| || ||| |||||| Sbjct 143154 CAACGAGAATGCCAACAAAGACAGCAAAG-TGATCCCGACCCAGCGTGACCTGCTGGCGG 143096 Query 154318 GTATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGC 154377 |||| || || || || | ||| | || ||| |||| | |||| |||| Sbjct 143095 GTATTGTCGCCAAGCATTACGCCAAACAGCATATTTTACCGCGTGATGTCGTGCTGGCGC 143036 Query 154378 ATGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCCATACACAA 154437 |||| ||| || |||||||||||||| || ||||| ||||||| || | Sbjct 143035 ATGAGCGTGGCGAAATCCATTATCATGACCTCGATTATTCCCCGTTCTTCCCGATGTTTA 142976 Query 154438 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 154497 ||||| ||| | || | ||||| ||| || | | || ||||| |||||||| || | Sbjct 142975 ACTGCATGCTGATCGACCTTAAAGGCATGTTGAATCACGGTTTCAAAATGGGTAATGCGG 142916 Query 154498 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 154557 | || || | || || || || || || || | | || ||||| | ||| | Sbjct 142915 AAATTGACACGCCAAAGTCTATTTCCACCGCAACGGCCGTCACCGCGCAGATTATCGCGC 142856 Query 154558 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TTGATAAAGTGCTGGC 154615 || | || || |||||||| || ||| || || || | || |||| ||||| Sbjct 142855 AGGTCGCCAGCCATATTTACGGCGGCACGACCATT--AACCGCATCGACGAAGTACTGGC 142798 Query 154616 TCCGTATGCAGAAATGACA--TATGAAAAGCATGTTAAGGATGCTAAAAAGTATAAAATT 154673 ||| | | | | || | | || ||| | || ||| || ||| | ||| Sbjct 142797 GCCG--TTCGTCACCGCCAGCTTCAATAAACATCGTCAGACTGCCGAAGAGTGGCAGATT 142740 Query 154674 TC-GTT--GGATCGTACATATGCGATGGAAAAG----ACTGAAAAAGATGTGTT-TGATG 154725 | | | |||| | | ||| | || || |||||||| ||||| ||| | Sbjct 142739 GCAGATGCGGATGG---CTTTGC----TCACAGCCGTACCGAAAAAGA-GTGTTATGACG 142688 Query 154726 CTTTCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTT 154785 | ||||| ||| ||||| || ||||| |||||||| || |||||||| || || || | Sbjct 142687 CCTTCCAGTCGCTGGAATATGAGGTTAATACGCTGCACACCGCCAACGGCCAGACGCCGT 142628 Query 154786 TCGTTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCCAGAA 154840 | || || | ||| || || || |||||| || |||||||| | Sbjct 142627 TTGTCACCTTCGGTTTTGGCCTCGGCACATCCTGGGAAT-----CGCGCCTGATCCAGCA 142573 Query 154841 AGCGATTCTGAAAAACCGTATTCGTGGTCTGGGTAAACAAGGTATTACCCCTGTGTTCCC 154900 | | |||||| ||||| ||| || ||||| ||| | | | ||| |||| ||||| Sbjct 142572 ATCAATTCTGCGTAACCGCATTGCCGGACTGGGCAAAAATCGCAAAACCGCTGTATTCCC 142513 Query 154901 TAAACTGGTCATGTTT---ATGGAAAAAGGTGT-AAACATGAATCCTGGGGATCGTAACT 154956 ||||||| ||||| || | || | || ||| || || || || |||| Sbjct 142512 AAAACTGG---TGTTTGCCATCCGTGACGGCCTGAATCATAAAGCC-GGTGACGCCAACT 142457 Query 154957 ATGACATCAAACAATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATATC---- 155012 | |||||||| ||| |||| ||||||||||| || ||||||||||| || ||| Sbjct 142456 ACGACATCAAGCAACTGGCACTGGAATGCGCCAGCAAGCGTATGTACCCGGACATCCTCA 142397 Query 155013 ATTA-GTTCGGCTAATAACCGCCTTATCACTGGTTCTAGCGTTCCTGTATCTCCTATGGG 155071 |||| | || | | | | | |||| |||| ||||| | | || ||||| Sbjct 142396 ATTATGATCAGGTGGTGAAAG-----TCACAGGTT----CGTTC--AAAACGCCGATGGG 142348 Query 155072 TTGTCGCAGTTTCCTTAATGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACG 155131 || ||||||||||| |||| |||| || || || | || | || || || Sbjct 142347 CTGCCGCAGTTTCCTGGGCGTGT---ATGAAGAAAATGGCGAGATGATCCACGAGGGCCG 142291 Query 155132 TAATAACTTGGGTGTGGTGACAATTAACCTCCCGCGTATTGCTCTTGAAGCACANNNNNN 155191 ||||| | || ||| | | | || || ||||||||||| || ||||| | Sbjct 142290 CAATAATATCGGCGTGATCAGCCTGAATCTGCCGCGTATTGCGCTGGAAGCGAA------ 142237 Query 155192 NNNNNNNNNNNNNNNNNCTTTTTGGCGTATTCTTGATGATCGTCTGGGTTTGTGTTTTGA 155251 | || ||| | || || || ||| || || | Sbjct 142236 ---CCGCGACGAAGCGGCGTTCTGGGCACTGCTCGACGAGCGTTTGCTGCTGGCGAAGAA 142180 Query 155252 AGCCCTGATGACTCGAATTGATAGCCTACGTGGTGTTAAAGCCAGCGTTGCGCCTATCCT 155311 ||| |||||||| || |||| | || || | |||||| |||| ||||| ||||| Sbjct 142179 AGCGCTGATGACCCGCATTGCACGTCTGGAAGGCATCAAAGCCCGCGTGGCGCCAATCCT 142120 Query 155312 GTACACAGAAGGTGCATTTGGTGTCCGTCTGAATCCTGATGATGA-AATCCTGGAACTGT 155370 ||||| |||||||| | ||||| || ||||| |||| || || | | | || | | | Sbjct 142119 GTACATGGAAGGTGCGTGCGGTGTGCGCCTGAAAGCTGACGACGATATTTCCGGCA-TCT 142061 Query 155371 TCAAAAATGGGCGTAGCTCTATCAGTCTGGGATACATCGGACTGCATGAAAC 155422 |||||||||| ||| ||| || || |||||||| || |||||||||| Sbjct 142060 TCAAAAATGGCCGTGCCTCGATTTCGCTCGGATACATTGGCGTGCATGAAAC 142009 >seq35 Length=455554 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 40093 ATCATCGTTTCCGCATGGAACCCTGTTGATCTGGATAAAATGGCATTGCGTCCGTGTCAC 40152 || ||||| || ||||||||| | || |||||||| ||||| || || || ||| Sbjct 112509 ATTATCGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCAC 112568 Query 40153 TGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCG 40212 ||||||||||||| || | |||||||| |||| ||| ||| ||||| || Sbjct 112569 GCTTTCTTCCAGTTCTATGTGGCCGACGGTAAATTGTCCTGCCAGCTGTACCAGCGCTCA 112628 Query 40213 GTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCTGACGCATATT 40272 ||| ||||| | || |||||||||||||||||| |||||| || ||| |||||| Sbjct 112629 TGCGATATCTTCCTCGGCTTGCCGTTCAATATCGCCAGCTACGCACTGCTGGTGCATATG 112688 Query 40273 ATCGCTGATATTTGCGGGTACGAAGTAGGTGATCTGGTTTGGACAGGTGGTGAT 40326 || || | |||| ||||| |||||| | || ||||| ||||| ||| Sbjct 112689 ATGGCGCAACAATGCGACCTTGAAGTGGGTGATTTTGTCTGGACGGGTGGCGAT 112742 >seq9405 Length=40329 Score = 102 bits (112), Expect = 9e-17 Identities = 275/413 (67%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 42362 ATCAAAAAATATGGCTTGCGTAACTCAACTCTTTCCGCTTTAATGCCATGTGAGAGTAGT 42421 ||||||| | ||| |||||||||| || || || || | ||||| | |||| | Sbjct 35094 ATCAAAACGCACGGCCTGCGTAACTCCACGCTGTCTGCGCTGATGCCGTCCGAGACCTCT 35153 Query 42422 TCTCAAGTAAGCAACTCAACAAACGGGATTGAACCGCCTCGCGGTCCTGTGAGTGTGAAA 42481 || || | |||| | || ||||| || || || || ||||| | | | ||| | ||| Sbjct 35154 TCGCAGATCTCCAACGCTACCAACGGTATCGAGCCACCGCGCGGCCATATCAGTATTAAA 35213 Query 42482 TCTTCGAAAGAAGGT-TCATTCAACCAGGTAGTACCGAACCA-GAACGATCAGATTGATT 42539 | |||||||| || || | | | |||| || ||| | | || || || || ||| Sbjct 35214 GCGTCGAAAGACGGGATCCTGCGTC-AGGTCGTGCCGGAGTATGAGCG-TCTGAAAGATC 35271 Query 42540 TCTATGATTATCTCTGGACAATGGCAAAACGCGGTAATAAAGGTTATCTGTCTCATGTTG 42599 || || || ||| ||| | || || | || |||||| | |||| Sbjct 35272 AGTACGAACTGCTGTGGGATATGCCGAACAACG------ACGGCTATCTGCAACTGGTTG 35325 Query 42600 CTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCTGCAAACACCAACTATGATCCGGCTA 42659 || |||||||| || | ||||| ||||| || | |||||||||||||| ||| | Sbjct 35326 GCGTGATGCAGAAATTCATCGATCAGGCGATTTCGTCCAACACCAACTATGACCCGTCGC 35385 Query 42660 ACTTCCCAGATGGTAAAGTGAAATCTGAAACCATCATTGAT-GACCTGCTTTATGCGAAC 42718 |||||| | |||||||| |||||| | |||| ||| |||| || || Sbjct 35386 GCTTCCCGAACAGTAAAGTGCCGA-TGAAACAGTTGTTGAAAGACTTGCTGACAGCCTAC 35444 Query 42719 TACTACGGCGTGAAAACTCTGTATTATCACAACACCCGCGACGGTGCAGGTGA 42771 | | ||||| ||||| ||||||||||| ||||||||||||||||| | ||| Sbjct 35445 AAATTTGGCGTCAAAACGCTGTATTATCAGAACACCCGCGACGGTGCTGATGA 35497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569528741229840