Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq223 134 4e-27 seq25848 123 7e-24 seq785 96.9 9e-16 >seq223 Length=511576 Score = 134 bits (148), Expect = 4e-27 Identities = 227/325 (70%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 124 TGGCTGCTGCGGCTTACCCCATCCGCCTTGCTGGCCGCCC-----TGGCTTTGC-CCACC 177 ||||||||| |||| |||||| ||||||||||||||||| ||||| | ||||| Sbjct 459459 TGGCTGCTGAGGCTGACCCCAACCGCCTTGCTGGCCGCCTGCGGATGGCTGACCGCCACC 459518 Query 178 GGCCTGGTTATCGTTGGCCG------CTGAC-AGCATCAACAACCGGCCATTCATGCCCA 230 || |||| | |||| | | | |||||| || ||| || | | Sbjct 459519 TGC-TGGTGCGCCGCCGCCGGCACGGCCGCCGAGCATCTGCATGGTGCCGCCCACGTTAA 459577 Query 231 CCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCA 290 | |||| ||| || ||||| |||||||||||||| || ||| || || ||||||| Sbjct 459578 CGACGACTTCGGTGGTGTATTTTTCAACGCCAGCCTGATCGGTCCATTTACGGGTTTGCA 459637 Query 291 GCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCA 350 | |||||||| ||| | |||| ||||| |||||| | || |||| |||||| | Sbjct 459638 GTGCGCCTTCGATGTAGACCTGAGAACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTA 459697 Query 351 GCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCT 410 || ||||| | ||||| ||||||||||||||||||||||||| ||| || || | Sbjct 459698 ATTTGCCGAACAACACCACACGGTGCCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTT 459757 Query 411 TATCCTTCCAGGTTTCAGACGTGGC 435 | || |||| | |||||||| || Sbjct 459758 TGTCACGCCAGCTCTCAGACGTTGC 459782 >seq25848 Length=116905 Score = 123 bits (136), Expect = 7e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 230 ACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGC 289 ||| | ||||| || ||||| || || | || | |||||||| ||||| || ||| Sbjct 108290 ACCGCAATTTCCGTGGTGTAACGGTCGATACCCTGCGCATCCTGCCATTTGCGGGTCTGC 108231 Query 290 AGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCC 349 ||| |||||| ||| | || || ||| ||| |||||| | | ||| ||||| ||| Sbjct 108230 AGCTGGCCTTCGATGTAGACTTTTGCGCCCTTGGTCAGGTATTCACCGGCAATTTCGGCC 108171 Query 350 AGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGC 409 ||||||||||| | ||||||||||||||| || |||||||| || ||| || || Sbjct 108170 AGCTTTCCGAACACGACCACGCGGTGCCACTCGGTTTTTTCGCGCTGCTCGCCGGTGGCT 108111 Query 410 TTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCCACGCCGTTGCCGTTCGGC 469 || || |||| |||| |||||||| | | | |||||| || |||||||||| Sbjct 108110 TTGTCACGCCAGTTTTCGGACGTGGCCAGCGTCAGGCTCGCCACCGCGCCGCCGTTCGGC 108051 Query 470 A 470 | Sbjct 108050 A 108050 >seq785 Length=396209 Score = 96.9 bits (106), Expect = 9e-16 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25744 CGCTTACCGGGAGTTACTGCTGCGTCAGCGAGTTAATGAAGCGGCCAAAGCAGTTATGCT 25803 ||||||||| || | | ||||| ||||||||||| ||| | ||| || || ||| | Sbjct 379462 CGCTTACCGCGAACTGATCCTGCGCCAGCGAGTTAACGAATCCGCCCGCGCGGTAATGGT 379403 Query 25804 GGCTTACGCGTCTGGTGCAGATCTTGACCAGTTAGGCGCGAACGTTGGTGTTAAGCGCCA 25863 ||| || ||| | || ||||| || ||| | | |||||| ||| || | || | Sbjct 379402 GGCGTATGCGACGGGAAGCGATCTGGATCAGCTGGCGGCGAACAATGGCGTACAACGACT 379343 Query 25864 GGTGATTACGCCTGCTGATGACACAACTGTGCCGCCAACACCTGCAGAAATGGAATCAGA 25923 |||| | |||||||||||| |||| | || |||||| | || | |||||| || Sbjct 379342 GGTGCTGACGCCTGCTGATAACACCAAAGTTCCGCCAGTCGCCGCTGTCATGGAAAGTGA 379283 Query 25924 TGAAGATTTCCGCGCGCGTATTC 25946 || |||||||||| | || |||| Sbjct 379282 TGCAGATTTCCGCACCCGAATTC 379260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135290922224404