Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq725 273 9e-69 >seq725 Length=236385 Score = 273 bits (302), Expect = 9e-69 Identities = 473/681 (69%), Gaps = 10/681 (1%) Strand=Plus/Plus Query 644 GCTTCTTCTTTTTCCAGCCATCTCACGCGTTTGTTTTTTACGGCAGGTATTTTGATTACA 703 ||||| | | ||| |||||||| ||||| || |||||| | || | ||| || || Sbjct 173948 GCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTTGCCTGTGGGACTTTTATCACT 174007 Query 704 GGTGCTTTTTCAAGCCATTTCCAGTCTCGCTCTGCGGCGCGCAGAATAGCCTTGATCATT 763 || ||||| || ||||||||||| ||||| |||||||||||||| | | ||| |||| Sbjct 174008 GGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCGCGCAGCAGCGACTTCATCAGG 174067 Query 764 GCCAGGTGTGTTGCTTTTGTTTGCGTGCTCACCGATTTAGGTATATAGGCTGGTGGTTCT 823 || |||||| |||| || || ||||| ||| | | ||| ||| | ||| Sbjct 174068 GCGAGGTGTTTTGCCTTGGTGGCTGTGCTGACCTTCTGGCGCTCATACTTTGGCGCTTCG 174127 Query 824 TTCCCTTTTCTTAATGCAGC-CTCCACCTGCAACTTCCATC--TCTCCTTTGTTTTTCGG 880 ||||| | ||| || || |||||| | || | ||| || ||| Sbjct 174128 ATCCCTCT-CTTCGCCAAGGACTGTGAATGCAAC--CGATGGTTTTCCGCTGCCCGGCGG 174184 Query 881 TTATACGCTTTGCTGATAACTGAGTAGATCATTGCCTCCGATATATCCTTAATCCTTATT 940 ||| | ||||||||| | | |||||| | || || | |||||||| | | | | Sbjct 174185 TTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTCGGTAATATCCTTCAACTTCACC 174244 Query 941 CCCTCGAAATGCTCAATCCAGAATGCGATTCTGGATTTATCGGAATCGATGGATTTCTTG 1000 || || |||||| | ||||||| | || | | ||| || ||| | |||||||| Sbjct 174245 CCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTTGTCATCATCCAGAGATTTCTTC 174304 Query 1001 TCGGCTTTTTCCTCAAGCCATCTCAGGCAGGCTTCTTCGAAAGTGACATCTGGCATATCC 1060 || || ||| || | ||| || | ||||| ||||| |||||||| || || | ||| Sbjct 174305 TCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTCAAAAGTGACGTCAGGAAAATCG 174364 Query 1061 CCCAGTCTGTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGC 1120 ||||| | ||||| ||||||||| |||| ||||| |||||||||| |||||| || | | Sbjct 174365 CCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTTGTCGTGCAGCTCCTGTGCCTCC 174424 Query 1121 CGCTTGTCCTTTGTGCCAAGAGACTCCTTAATTCGCTTCCCGCCCGGGAGCGAGTACGAG 1180 | ||||| | ||| |||||||| || |||| || | ||||||||| |||||| | Sbjct 174425 CTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTTGCCCGCCCGGCAGCGAGAAGCTC 174484 Query 1181 GCGTACCATATTTCACCTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCATCAC 1240 |||||||| || | |||||| ||||||| ||||| || ||||||| ||| |||| Sbjct 174485 GCGTACCAGATGTTACCTCTACGGAAGATAGACATGTTTTTTCCTCGAGCATG---TCAC 174541 Query 1241 CCGCGCTCACCTGGACAGTATGCAGCGGTGAATGAAGTGCTGCAATGCAGGCTTGCCGGG 1300 || | ||||| |||||| | | |||| || ||||| ||||| || |||||||||| Sbjct 174542 CCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAGTGCGGCAATACATGCTTGCCGGG 174601 Query 1301 TTGTGAGATAAGGTGATCTTT 1321 | || ||||| || |||| Sbjct 174602 TGAAGATGTAAGGGGA-CTTT 174621 Score = 163 bits (180), Expect = 1e-35 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 85 GTGGGACAAATTTGGGACATCGTCACTCAATATGTCGTCAATTTTCCTCGCGTGCTCTGT 144 |||||||| |||||||||| | | || || |||| || | | |||||||||| || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 145 CAAATGATTAGGTGCAAGGTGTGCGTACCTACGCACCATTTCGATAGACTCCCAGCCGCC 204 |||||||| || || || || ||||| | || ||||| ||||| |||||||||||||| Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 205 CATTTCCTGAAGTACTGACAGCGGTACACCTGACTGAATTAACCAACTGGCCCAAGTGTG 264 |||||||||||| ||||||| ||| ||||| | |||||| | ||| || ||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 265 GCGGAGGTCATGAAA 279 | ||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 Score = 129 bits (142), Expect = 2e-25 Identities = 327/493 (66%), Gaps = 16/493 (3%) Strand=Plus/Plus Query 25507 GTTCTGGCGCTG--ATTGCCGCAGGGGCTTCTGCGCCTGAAATCCTGGATCAGTTTCTGG 25564 || ||||||||| |||| | || || ||||| || | || || ||||| || |||| Sbjct 192989 GTGCTGGCGCTGGTATTG--GGTGGCGCATCTGCCCCGGCTATTCTCGATCAATTGCTGG 193046 Query 25565 ATGAAAAAGAAGGTAACCACACCACGGCATACCGTGATGGTGCGGGGATCTGGACCATCT 25624 |||| |||||||||||| | || || || | |||||| | || | ||||| || | Sbjct 193047 ATGAGAAAGAAGGTAACAGCCTGACTGCCTATCAAGATGGTACCGGCCTTTGGACGATTT 193106 Query 25625 GCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCTGGCATGAAGCTGTCGAAGG 25684 ||||||| || | ||| || || |||||||| || | || |||| |||| | | Sbjct 193107 GCCGTGGCGCAATCCGTGTCGACGGTAAGCCGGTCTATAAAGGTATGAGGCTGACCGCTG 193166 Query 25685 AAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGGCGCTGGCATGGGTGGAGAAAA 25744 || |||| | ||| || | || | |||||| | || |||||| || ||| Sbjct 193167 CGAAGTGCGCGCAGGTGAATCGGCTGGAGTCAAACAAGGCGATTGCCTGGGTGAAGGAAA 193226 Query 25745 ACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCCTTACA 25804 || |||| || ||||| || | || |||| || || || || || ||||| || |||| Sbjct 193227 ACGTCAACGTTCCACTTACGCAGCCTCAGATTGCTGGCATCGCCTCGTTCTGCCCCTACA 193286 Query 25805 ACATTGGCCCGGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAA---TTAATGCAGGAG 25861 |||| ||||| || ||||| | || || || | | |||| | || || || | Sbjct 193287 ACATCGGCCCCTCGAAATGTTTTTCATCCACTTTCT---ACCGAAAGCTCAACGCTGGCG 193343 Query 25862 ATCGAAAAGGTGCCTGCGAAGCGAT---TCGCTGGTGGATTAAGGACGGTGGCAGGGACT 25918 || || || ||| | ||| |||||| | | |||||||| | |||| Sbjct 193344 ATAAGCGCGGCGCGTGCAGCGAGATAAAGCGCTGGGTGCGT---GACGGTGGTAAAGACT 193400 Query 25919 GCCGTATTCGCTCAAATAACTGTTATGGTCAGGTATCCCGTCGTGACCAGGAGAGCGCGC 25978 || | | || ||||||| || ||| ||||| || || || ||||| |||| || Sbjct 193401 GCAATGTCCGGGCAAATAATTGCCTTGGGCAGGTGATACGCCGCGATCAGGAAAGCGAGC 193460 Query 25979 TGGCGTGCTGGGG 25991 || |||||||||| Sbjct 193461 TGACGTGCTGGGG 193473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200343787600840