Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq223 152 5e-32 seq48539 102 7e-17 seq8056 93.3 4e-14 >seq223 Length=511576 Score = 152 bits (168), Expect = 5e-32 Identities = 389/580 (67%), Gaps = 9/580 (2%) Strand=Plus/Minus Query 59831 TTGTCATTGCAGATACCGACGGCTCTCATCTCGCT-CCGTTATATTATGAATATCAAG-A 59888 |||| | ||||||||||||||| |||||| ||| |||||| | | | | ||| | Sbjct 114071 TTGTGGTGGCAGATACCGACGGCAGTCATCT-GCTACCGTTA-ACCAGCACGCTGAAGGA 114014 Query 59889 ACTGAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGA 59948 | |||||||| || || | ||| ||| || ||||||| |||||||||||| || Sbjct 114013 AAATAACCAGCC-TTATAACAACAAGTC-TGGC-AAGGTCGTTGGCGCATATTTTGTTGA 113957 Query 59949 ATGGGGTGTTTATCCTAGAA-ATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGC 60007 ||||| || ||| | | ||| ||| || ||| | | || | | || || | | Sbjct 113956 GTGGGGCGTGTATGGTCGCGGATTCTCC-GTGGATAAAATCCCTGCGCAGAACCTGACAC 113898 Query 60008 ATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAA 60067 |||| | ||||| || | ||||| |||||||| ||||| || ||||||||| | |||| Sbjct 113897 ATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATTAACGACAGTTTAAAAA 113838 Query 60068 CCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAG 60127 ||| || ||||| | || | || || | ||| | || || | || ||||||| Sbjct 113837 GCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGGCGTCAGGATTTTAAAG 113778 Query 60128 TATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGA 60187 | | || |||||||| ||||| || || |||| || || || || | | | Sbjct 113777 TTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAAGGCGTCAGTGAATATT 113718 Query 60188 ACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACA 60247 | ||| || ||||||||||| || || | ||||| ||| || |||| || Sbjct 113717 CAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGAAAAAAGCCTATCCAAACC 113658 Query 60248 TCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCACG 60307 | ||| | | || || ||||| || ||||| | || || ||||||| || | | | | Sbjct 113657 TGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCGTTCTATTTCATGAAGG 113598 Query 60308 ATACGGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAAT 60367 ||| || || || | | || |||| || || || || || || || ||||| | Sbjct 113597 ATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAAAGAATTCCTGCAAACCTGGAAGT 113538 Query 60368 TTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGG 60407 | || |||||||| || || |||||||| ||||| ||||| Sbjct 113537 TCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498 >seq48539 Length=7100 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 ||||||||||| | || || ||||| || || || || |||| || | || || || Sbjct 6253 AACAACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAG 6312 Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288 | |||||| || || | || || ||||||| || ||||| ||||| || || Sbjct 6313 CCTTCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCA 6372 Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348 |||||||| || || |||| || ||||| || | ||||| | ||| || |||| Sbjct 6373 GATCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGAT 6432 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||||| ||||| ||||||||| | || || ||| Sbjct 6433 TACAATATCCAAAAGGAATCCACCCTCCACTTGGTG 6468 >seq8056 Length=34938 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| || |||||||| ||||||| | || || || || Sbjct 31902 CATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTC 31961 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | ||||| |||||| || ||||| || || || || ||||| Sbjct 31962 AGATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCA 32021 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || || | || || |||||| | ||||||| | | | | ||||||||| Sbjct 32022 ACAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAA 32081 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||| || || || || ||| | ||||| ||| Sbjct 32082 TATCCAGAAGGAGTCGACCCTCCATTTGGTG 32112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444711429650880