Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq223 152 5e-32
seq48539 102 7e-17
seq8056 93.3 4e-14
>seq223
Length=511576
Score = 152 bits (168), Expect = 5e-32
Identities = 389/580 (67%), Gaps = 9/580 (2%)
Strand=Plus/Minus
Query 59831 TTGTCATTGCAGATACCGACGGCTCTCATCTCGCT-CCGTTATATTATGAATATCAAG-A 59888
|||| | ||||||||||||||| |||||| ||| |||||| | | | | ||| |
Sbjct 114071 TTGTGGTGGCAGATACCGACGGCAGTCATCT-GCTACCGTTA-ACCAGCACGCTGAAGGA 114014
Query 59889 ACTGAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGA 59948
| |||||||| || || | ||| ||| || ||||||| |||||||||||| ||
Sbjct 114013 AAATAACCAGCC-TTATAACAACAAGTC-TGGC-AAGGTCGTTGGCGCATATTTTGTTGA 113957
Query 59949 ATGGGGTGTTTATCCTAGAA-ATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGC 60007
||||| || ||| | | ||| ||| || ||| | | || | | || || | |
Sbjct 113956 GTGGGGCGTGTATGGTCGCGGATTCTCC-GTGGATAAAATCCCTGCGCAGAACCTGACAC 113898
Query 60008 ATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAA 60067
|||| | ||||| || | ||||| |||||||| ||||| || ||||||||| | ||||
Sbjct 113897 ATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATTAACGACAGTTTAAAAA 113838
Query 60068 CCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAG 60127
||| || ||||| | || | || || | ||| | || || | || |||||||
Sbjct 113837 GCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGGCGTCAGGATTTTAAAG 113778
Query 60128 TATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGA 60187
| | || |||||||| ||||| || || |||| || || || || | | |
Sbjct 113777 TTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAAGGCGTCAGTGAATATT 113718
Query 60188 ACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACA 60247
| ||| || ||||||||||| || || | ||||| ||| || |||| ||
Sbjct 113717 CAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGAAAAAAGCCTATCCAAACC 113658
Query 60248 TCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCACG 60307
| ||| | | || || ||||| || ||||| | || || ||||||| || | | | |
Sbjct 113657 TGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCGTTCTATTTCATGAAGG 113598
Query 60308 ATACGGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAAT 60367
||| || || || | | || |||| || || || || || || || ||||| |
Sbjct 113597 ATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAAAGAATTCCTGCAAACCTGGAAGT 113538
Query 60368 TTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGG 60407
| || |||||||| || || |||||||| ||||| |||||
Sbjct 113537 TCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498
>seq48539
Length=7100
Score = 102 bits (112), Expect = 7e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228
||||||||||| | || || ||||| || || || || |||| || | || || ||
Sbjct 6253 AACAACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAG 6312
Query 25229 GCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCC 25288
| |||||| || || | || || ||||||| || ||||| ||||| || ||
Sbjct 6313 CCTTCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCA 6372
Query 25289 GATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGAT 25348
|||||||| || || |||| || ||||| || | ||||| | ||| || ||||
Sbjct 6373 GATCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGAT 6432
Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||||||| ||||| ||||||||| | || || |||
Sbjct 6433 TACAATATCCAAAAGGAATCCACCCTCCACTTGGTG 6468
>seq8056
Length=34938
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || || ||||| || |||||||| ||||||| | || || || ||
Sbjct 31902 CATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTC 31961
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| ||||| | ||||| |||||| || ||||| || || || || |||||
Sbjct 31962 AGATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCA 32021
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| | || || | || || |||||| | ||||||| | | | | |||||||||
Sbjct 32022 ACAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAA 32081
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384
||| || || || || ||| | ||||| |||
Sbjct 32082 TATCCAGAAGGAGTCGACCCTCCATTTGGTG 32112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444711429650880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |