Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6691 114 2e-19 >seq6691 Length=42033 Score = 114 bits (126), Expect = 2e-19 Identities = 149/202 (74%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAG--GGCCTCG 1456168 |||| |||| ||| ||||| |||||||| || |||||||| || || |||| | Sbjct 14430 CCGTGTGTGAAGAAGAAGGCAGACTGGGCCCTGCAGTGGATCGGCAGCGACACGGCCAC- 14372 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 ||| | ||||| | || | ||| || |||| || || ||||| ||||| ||||| Sbjct 14371 ---CTTCGGGGAGCGTGTGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAG 14315 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCA 1456287 ||| | ||||||||||||| |||||||| |||||||||||||| ||| ||| |||| Sbjct 14314 TTTTGCCTCCATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCCGG-CTTGACCTTCAGCA 14256 Query 1456288 ACGAATTTATCAGTCGCGACGA 1456309 |||| || ||| || ||||| Sbjct 14255 ACGAGTTGATCTCCCGAGACGA 14234 Score = 89.7 bits (98), Expect = 7e-12 Identities = 138/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 1456551 AAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCAT 1456609 |||||||| ||| ||| | ||||| || || | ||||||||| || ||| | || Sbjct 14129 AAGAGTTTCTCACCGACGCCCTGCCCGTCAGACTACTGGGCATGAACTGCGACC--TGAT 14072 Query 1456610 GTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAG 1456669 || ||||| ||||||||| || |||||||| || | | || || ||||| | ||| Sbjct 14071 GTCGCAGTATATTGAATTT-GTGGCCGACCGGCTCTTGGTGGACCTGGGCTGTGCC-AAG 14014 Query 1456670 CACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACC 1456729 |||||| | | ||||| ||| | ||||| ||||||| || || ||||||||| Sbjct 14013 CACTACGGATCCAAGAACCCCTTCAGCTTCATGGACATGATCTCCCTGGAAGGCAAGACC 13954 Query 1456730 AACTTTTTCGAG 1456741 ||||| |||||| Sbjct 13953 AACTTCTTCGAG 13942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171172034183108