Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq48539 96.9 3e-15 seq8521 86.0 6e-12 seq8056 86.0 6e-12 seq4062 82.4 7e-11 >seq48539 Length=7100 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | || |||||||||||||||||| || | Sbjct 6943 TTCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCG 6884 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||| || | || |||| ||||| || ||||| ||||||| |||||| || | | Sbjct 6883 AAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGG 6824 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | |||||||| ||||| ||| | | || | | || || | ||| | Sbjct 6823 GAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAA 6764 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| ||||| ||||| || || | || || ||||| |||||||||| Sbjct 6763 CTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATTC 6713 >seq8521 Length=40141 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | ||| || | || ||||||||||| || || || Sbjct 2666 CTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAA 2607 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| || | |||| | |||||||| |||||| ||| | | | Sbjct 2606 GATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATT 2547 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | || ||||| | ||||| || || || |||| ||| || || Sbjct 2546 CTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGAC 2487 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2486 GAAGATCTGCAT 2475 >seq8056 Length=34938 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || |||||| || || |||||||||| | ||| || | || || Sbjct 32112 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTC 32053 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 | || || || || || || | || || || |||| ||||| | || ||||| | Sbjct 32052 TAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCT-T 31994 Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || ||| || || | | || | | ||| || | || ||||||| |||||||| | Sbjct 31993 GAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCT 31934 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||||||||||||| || |||||||| Sbjct 31933 TTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 >seq4062 Length=67394 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| || | ||||| ||||| || | || |||||| || |||||||| || | Sbjct 48391 TCCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 48332 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || | | || ||||||||||| || || || |||| || ||||||||| | || Sbjct 48331 AAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 48272 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||| || |||||| ||| | | | | | ||||| | ||||| Sbjct 48271 GATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCAC 48212 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||| | || ||||| || |||||||| Sbjct 48211 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 48164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450405725916720