Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq6760 250 6e-62 seq725 197 3e-46 seq19589 86.0 2e-12 >seq6760 Length=71796 Score = 250 bits (276), Expect = 6e-62 Identities = 357/503 (71%), Gaps = 0/503 (0%) Strand=Plus/Plus Query 19781 GGTCTTGATTTTGTTTCTAAGTAAATTCTACCTATATATTCACCGAGAACACCAATCCCG 19840 |||||| ||| || || | ||||| || || || || ||||| || || ||||| || Sbjct 16331 GGTCTTTGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCT 16390 Query 19841 ATCAGTTGCACTCCACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACT 19900 || || || | |||||| | |||||| || || || | | || ||||| || | || Sbjct 16391 ATTAGCTGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACG 16450 Query 19901 GGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTT 19960 ||||| ||||| | |||||||| |||||||| || |||| || || || | | Sbjct 16451 GGGTTGCCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCG 16510 Query 19961 GCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATA 20020 || ||||| | |||||||| ||||| | || || ||||| ||||| || ||| || Sbjct 16511 GCCACAAAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATG 16570 Query 20021 CCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACACGC 20080 ||||| || || || ||||| | |||||| ||||||||||||| || ||||| || Sbjct 16571 CCTTCGAGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGT 16630 Query 20081 TCTGCGCGTACATATTCAACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTC 20140 || | || |||||| || || || || ||||||| ||||| ||| | |||||| Sbjct 16631 TCATCTCGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTC 16690 Query 20141 ATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGT 20200 ||||| | || || ||||| | || |||||||| || || || | |||||||| | Sbjct 16691 ATGAATAAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAAC 16750 Query 20201 CGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTATAG 20260 | ||||| || || |||||||| ||||| || |||| || |||| || | ||||| Sbjct 16751 CTGAAATCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAA 16810 Query 20261 AACCACTCAGCTGTCTTACGTTT 20283 ||||||||||| | ||||| || Sbjct 16811 AACCACTCAGCGCTTTTACGCTT 16833 >seq725 Length=236385 Score = 197 bits (218), Expect = 3e-46 Identities = 512/767 (67%), Gaps = 25/767 (3%) Strand=Plus/Plus Query 21860 GACATTCATCAATCAGCCTTTGTGCTTCATGAGGCTCCAGCCAGCGGATACGTTTATTCT 21919 |||||||||||| ||| | ||| ||||||| || || ||||| | || || ||||| | Sbjct 173925 GACATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTT 173984 Query 21920 TCGGTTGAGGCACTTTAATAATTGGTGCCTTATCCAGCATTTTCCATTCACGCTCTGCGG 21979 | | || || ||||| || | ||| || || |||||| |||||| || || ||||||| Sbjct 173985 TTGCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGG 174044 Query 21980 CTCTTAGCAGGGCCTTTATAAATGAAAGATGCGTAGCCTTCGTTGCAACGGACGCTGG-- 22037 | | ||||| | ||| || | | || || | ||||| || || | ||| Sbjct 174045 CGCGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTGTG----CTGACC 174100 Query 22038 TTTTGGCGTGTATTCT--GGAACAGGTTTCCCtttttttCTGCATGCTTCTGCCCTGAGT 22095 || ||||| || || || | ||||| | || | || | ||| ||| | Sbjct 174101 TTCTGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTT-CGCCAAGGA-CTG---TGAAT 174155 Query 22096 TT---CCA--GTTTTCCTCATGACGCCGGTTCGTCATTTT-CTGCATTGCTGAATAAATT 22149 | | ||||||| | || ||||| |||||| ||| || || | || ||| Sbjct 174156 GCAACCGATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTG-ATCGCCGTGTAGATT 174214 Query 22150 TTTGATTCAGTAATGTCTTTTAGTTGCATTCCTGCGAAATGTTGAAGCCAGAATCCGATC 22209 || | ||| ||||| || || | | || ||| | ||||| ||||||||||| ||| Sbjct 174215 TTGGCTTCGGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATC 174274 Query 22210 CGGCTTTTGTCATCGTCCAGTGATTTTTTATGTGCTTTCTCTTCGAGCCACCTGACACAC 22269 |||||||||||||| ||||| ||||| || | || ||||| | |||||| | ||| Sbjct 174275 CGGCTTTTGTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAG 174334 Query 22270 GCTTCCTCAAACGTCATATCAGGTATTTCACCAAGTTTGCTGACCCGCCATGCTTCAGCC 22329 || || ||||| || | ||||| | || || || | | ||||| || | Sbjct 174335 GCCTCTTCAAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGAT 174394 Query 22330 TTTAGCTTGTCATGGAGCT-CTGTCGCCTGCCTTTTGTCCTTTGTTCCAAGAGACTGTTT 22388 ||| ||||| || |||| |||| |||| ||| |||| | ||| |||||||| | ||| Sbjct 174395 TTTCTTTTGTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTT 174453 Query 22389 AAATCTTTTACCGTTCGGCAATGTGAAACTGGCGTACCATATTTCACTTCTGCGGAAGAG 22448 || ||||| ||| ||||| | ||| || |||||||| || | || ||| ||||||| Sbjct 174454 AAGTCTTTGCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGAT 174513 Query 22449 TGACATTTTCTTTCCTCTGTTATGCCATCACCCGCGCTCACCTTGATAGTATGCAGCGGA 22508 ||||| || ||||||| ||| |||||| | ||||| || ||| | | ||| Sbjct 174514 AGACATGTTTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGT 174570 Query 22509 GACTGAAGCGCCGCAATGCAGGCTTGTCGCGTTGTGAGGTAAGGAGATTTTGGTTTAGTG 22568 | || || ||||| || ||||| || || || |||||| || |||||||| | Sbjct 174571 TTATTCAGTGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTTCGAT 174630 Query 22569 GGGTCTTTGCGTGTTGCCTGTAGGCGGCCTGTTCGTATCCAGTTGGT 22615 || || ||||| || || | |||||| || | ||| ||||| Sbjct 174631 GGATCCTTGCGCTCGGCGTGAACGCGGCCATCTCTGACCCATTTGGT 174677 Score = 158 bits (174), Expect = 3e-34 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 21322 GACTGGGACAAATTTGGGACCGATGGGTTCAGGATCGAGTCTATTTGCCGTGCGTGTTCG 21381 || ||||||| ||||||||| || | || | |||||| ||| ||||| || Sbjct 175478 GAGTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCC 175537 Query 21382 GTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAACCATTTCGATAGACTCCCAGCCT 21441 || | ||||| || || || || || ||||| || ||||| ||||| ||||||||||| Sbjct 175538 GTTAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCG 175597 Query 21442 CCCATTTCCTGTAACACTGACAATGGGACTCCGGCTTGAACCAGCCAACTTGCCCAGGTG 21501 ||||||||||| | |||||||| ||||| ||||| |||| |||||| |||||||| ||| Sbjct 175598 CCCATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTG 175657 Query 21502 TGTCTCAAGTCGTGAAA 21518 ||||||| ||||||||| Sbjct 175658 TGTCTCAGGTCGTGAAA 175674 >seq19589 Length=24186 Score = 86.0 bits (94), Expect = 2e-12 Identities = 218/331 (66%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 33668 ACAAGGACTGCTGGCAAACGCCGCTTTGGCTTTTTGATGCACTGGATATTGAGTTTGGAT 33727 |||| ||| ||||||| |||||| | | || ||| |||||| |||||||||| | Sbjct 12366 ACAAAGACCGCTGGCAGACGCCGATGGAAGTATTCACTGCGCTGGATCTTGAGTTTGGTT 12425 Query 33728 TCTGGCTGGATTCGGCAGCGAGCGACAAAAATGCTCTGTGCGCTCACTGGTTAACTGAGG 33787 | | || || | || | | || | || || || ||||| | | | || || | Sbjct 12426 TTTATCTTGACGCCGCTGA---CCACCAGAACGCGCTTTGCGCCCGGTACCTGACAGAAG 12482 Query 33788 CCGACGACGCGCTAAATTCTGAGTGGATAAGCCACGGTGCAATCTGGAATAACCCACCGT 33847 |||| || ||||| | || ||| || |||| ||||||||| |||||| || | Sbjct 12483 CCGATGATGCGCTGGCCACCGAATGGGAGAGTTACGGCGCAATCTGGTGTAACCCGCCAT 12542 Query 33848 ACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGACAGA 33907 ||||| |||| ||||||||| || || ||||| ||||| ||| ||| ||| Sbjct 12543 ACAGCTCGATCACGCCGTGGGTTGAGAAGGCCGCCGAGCAATGCCGCGCCCAGTACCAGC 12602 Query 33908 CGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCAAGGCTCTGGAGA 33967 |||| || ||||| |||| | |||| || || |||||| ||| ||| | Sbjct 12603 CGGTGGTAATGCTGCTGCCCGCCGATACCTCAACAGGCTGGTTCTCGCTGGCGCTGACTA 12662 Query 33968 GTATTGACGAAGTTCGCATCATCACTGATGG 33998 |||||| | ||| | ||||||||||| Sbjct 12663 CAGCCGACGAAATCCGCTTTATCACTGATGG 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122622885596108