Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq35 114 2e-20 >seq35 Length=455554 Score = 114 bits (126), Expect = 2e-20 Identities = 192/275 (70%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 197613 TGAAACAATATCTTGAGATGATGCAGAACATTCTGGACGAGGGTCATGTTAAAGGCGATC 197672 ||||||| ||||| || | |||||||| | || || ||||| ||||| ||| | Sbjct 112129 TGAAACAGTATCTGGATTTAATGCAGAAAGTGCTCGATGAGGGCACCCCTAAAGCCGACC 112188 Query 197673 GTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTGCGTAAAG 197732 |||| || || || ||| | || | ||||| | ||||||||||| | |||| ||| Sbjct 112189 GTACCGGTACGGGCACGTTGTCGATTTTTGGTCATCAGATGCGTTTCAACTTGCAGGAAG 112248 Query 197733 GTTTCCCGTTAGTCACGACTAAGAAACT-CCACCTGCGTTCTATTATCCATGAACTGCTG 197791 |||||||| | |||||||| || | || ||| | || || ||||| |||||||| ||| Sbjct 112249 GTTTCCCGCTGGTCACGACCAA-ACGCTGCCATTTACGCTCCATTATTCATGAACTCCTG 112307 Query 197792 TGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACCATTTGG 197851 |||||||| | || || || |||| |||||| || ||| || | ||| ||| Sbjct 112308 TGGTTCCTGAAAGGCGAAACTAACATTGCTTATCTGCGTGAAAACAATGTCAGCATCTGG 112367 Query 197852 CGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCC 197886 |||||| || ||||| || |||| || || Sbjct 112368 GACGAGTGGGCTGACGAAAACGGCGACCTCGGACC 112402 Score = 109 bits (120), Expect = 8e-19 Identities = 193/279 (69%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 198332 TCATGTCAGCTCTATCAACGCAG-TGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGC 198390 || || ||||| || || ||| |||| || | ||||||||| |||||||||| ||||| Sbjct 112605 TCCTGCCAGCTGTACCAGCGCTCATGCG-ATATCTTCCTCGGCTTGCCGTTCAATATCGC 112663 Query 198391 GTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGATTT 198450 |||||| | || ||||| ||| | || || || || | | ||| ||||| Sbjct 112664 CAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCTTGAAGTGGGTGATTT 112723 Query 198451 CATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCTCCA 198510 | |||||||| || || || || || ||| || || |||| ||| | | || || Sbjct 112724 TGTCTGGACGGGTGGCGATACGCACCTGTACAGCAACCACATGGAACAGACGCATCTGCA 112783 Query 198511 GCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATCTAT 198570 |||| ||||| || | || || ||||| |||| ||||| ||||||| || | Sbjct 112784 ACTGAGCCGTGAACCCCGTGCGTTGCCAAAACTTGTCATTAAGCGCAAACCGGCCTCCTT 112843 Query 198571 CTTCGATTATAAATTCGAAGATTTTGAGATCGTTGGGTA 198609 || ||||| || ||||||||||| ||||| | ||||| Sbjct 112844 GTTTGATTACAACTTCGAAGATTTCGAGATTGAAGGGTA 112882 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 198046 CGACCAGATCTCTAAGGTGATTGACCAGCTGCGTAACGATCCTGACAGTCGCCGTATTAT 198105 ||||||| | | || ||| |||| |||||| || || |||||| || |||||||| Sbjct 112454 CGACCAGCTGGCAAATGTGGTTGAACAGCTGAAGAAAGACCCTGACTCGCGTCGTATTAT 112513 Query 198106 TGTCAGCGCATGGAACGTGGGTGAGTTGGATCAAATGGCGTTAGCTCCGTGTCATGCGTT 198165 || |||||||||||||| || ||||| | |||||| | || || || || || || Sbjct 112514 CGTGTCTGCATGGAACGTGGGCGAACTGGATAAGATGGCGCTGGCACCTTGCCACGCTTT 112573 Query 198166 CTTTCAGTTCTA 198177 ||| |||||||| Sbjct 112574 CTTCCAGTTCTA 112585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768531766596720