Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq742 280 1e-70 seq223 262 3e-65 seq48539 95.1 1e-14 seq8056 84.2 2e-11 >seq742 Length=196864 Score = 280 bits (310), Expect = 1e-70 Identities = 1091/1695 (64%), Gaps = 50/1695 (3%) Strand=Plus/Minus Query 130406 ttttCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || |||||||| || || ||||| ||| ||||| || | ||| |||||||| || Sbjct 48921 TTGTCAACGGTGAACTGGATAGCATTTACGGCAGGCTTTGTTCTCAAGTAATACATTCCA 48862 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGT 130525 || || | || || || ||||| |||||| | || ||| ||||| Sbjct 48861 GTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTTCCGTAGTTGGGC 48802 Query 130526 TGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCC 130585 | |||||| |||||||| || || ||| |||||||| || || | ||| || ||| Sbjct 48801 TCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCTCGGTCGGCTGCC 48742 Query 130586 ATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGT 130645 || | || || |||| || || |||||| | |||||||| ||||| || ||||| Sbjct 48741 ATCTTGATCAGTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGAGATCTCTGATGTGC 48682 Query 130646 TTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATA 130705 |||||||| | | | ||||| | ||||||||||| || || || ||| Sbjct 48681 TTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGATGAGATTTTTCATG 48622 Query 130706 CTTTTATCGTACAATCCAAGCT-GTACAAGATCTTTTACCAAATGATTATTAATGATTTG 130764 | || |||| || || | ||| ||| | | ||| | ||| | | || Sbjct 48621 TCGTCGTCCCACAAATCAGCCTCGGTCAA-ATCACGCAGTAGATGGTGATTCACAACCTG 48563 Query 130765 AAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTC 130824 || || |||| || ||| | ||| ||| |||||| ||||| |||||||||||||| Sbjct 48562 GAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGGGTTCAAAGGATTC 48503 Query 130825 GTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATT 130884 |||||| || || || || || || | ||||| |||||| ||| | | || || || Sbjct 48502 GTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGAGAAGCAGCGAGTT 48443 Query 130885 ACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGG 130944 | | ||||| ||| ||| || ||||| || |||| | ||| | | ||||| Sbjct 48442 CCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTCCACAAATCTGTAGG 48383 Query 130945 TTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAA 131004 || |||| |||||| ||| |||| || || ||||| ||| | |||| | | | Sbjct 48382 CTT---CTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGACATCCTGGGTA 48326 Query 131005 CGATTCGTA-GATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAAT 131063 || ||||| | ||| | | || ||||| ||| || ||||||| ||| ||||||| Sbjct 48325 CGTCTCGTATGTACCCTCCTTCTCG-GCCAGCTCGCAACTTGCTTCCAGAGCACCGTAAT 48267 Query 131064 AAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATT 131123 | | || || ||||||| ||| | | | |||| | ||||| |||| ||| Sbjct 48266 ACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTCAAAAGGCAATC 48207 Query 131124 TCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTA 131183 ||||||| | |||||| ||||| || || ||||| |||| || | || | || | Sbjct 48206 TCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGGGCGGTGACGCA 48147 Query 131184 AATTACATTTACGCGAACATTCGGT--GGGATAAAGGTTAATGTCAATTATTTTGTTTAA 131241 || || | | | | | ||| || |||| ||||| ||| || |||||||| || Sbjct 48146 TGTTCGATGT--TCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGATAATTTTGTTCAA 48089 Query 131242 ATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTC 131301 ||| ||| | | || ||| | |||| || || || || || | || || Sbjct 48088 ATTTTTAGTGACAGTCTTGGTTACGATCTTCAGCTTTTCAAAGTCGAA--TACCTTATT- 48032 Query 131302 GAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATA 131361 | |||||| ||| ||| || || |||| ||| || || || | | |||| Sbjct 48031 ---ATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGC---TACTTCATC 47978 Query 131362 ATCGCAA---TACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATT 131418 | | || || | ||| ||||| | ||| | ||||||| ||| || || |||| ||| Sbjct 47977 TTTGGAAGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGATT 47918 Query 131419 TTGTTGATTGCT-TTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTT 131477 |||||| ||||| ||| | | ||| ||||||||||| ||||||||| || ||||||| Sbjct 47917 TTGTTGGTTGCTCTTTCGGTTGCAC-GCGTCCTTGTACAGCATGTAGGGGGTTCCCGTTT 47859 Query 131478 CGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTA 131535 | ||||||| ||| || ||| ||| | | ||| | || ||||| || | Sbjct 47858 CTACTTGAGATTCGATGATGGCCATCCACAAAGTCTGCG-------CCTTGATCTTCTTC 47806 Query 131536 TTGG--CCGCGTT---TTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAA 131590 || | | | || |||||| | ||||| | ||||| | || || | | | Sbjct 47805 TTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCA-GCA 47747 Query 131591 CT-GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAAC 131649 || || || |||| ||| ||| ||||| || ||| | |||| || || Sbjct 47746 CTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCGAC 47687 Query 131650 TCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTC 131709 |||||||| |||| ||| || | ||| || |||| || | || | || || Sbjct 47686 ACGCTTCATGAACAGATCGGGGATCCACAAGCCGTAGAATAAGTCACGTGCACGAACTTC 47627 Query 131710 TTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTC 131769 || | || || | |||||||| | ||| || || || |||||||| ||||| || || Sbjct 47626 CTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGGCTC 47567 Query 131770 CAAATACACTGCCATTGC-----GCCT-TTGCGCTTACCGCCTTGATTAACATGACGAAC 131823 | || | || | || |||| ||| || || || || | |||| || | Sbjct 47566 AACGTAAATAGCGAAAGCTCCGGGCCTCTTG---TTTCCTCCCTGGTCTACATAGCGGGC 47510 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 | |||| ||||| || |||| |||||| |||| || |||| | ||| || || | | Sbjct 47509 CGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGC 47450 Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTT 131943 |||||| || ||||||| ||| ||| || | || || |||||||| | | || Sbjct 47449 GATGTAGGAACCCTTGGCTCGGATGCAGTGTACATGAAGGCCGATACCTCCAGCAGACTT 47390 Query 131944 AGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAAT 132003 || | || || || | | || |||| ||||| ||||| | || || || || Sbjct 47389 GGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCAT 47330 Query 132004 GTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGG 132063 | | | || |||||||| |||| ||| | | ||| | || || || | || || Sbjct 47329 GGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGG 47270 Query 132064 GCTGGCGTGTGTAAA 132078 ||||||||| || || Sbjct 47269 GCTGGCGTGAGTGAA 47255 >seq223 Length=511576 Score = 262 bits (290), Expect = 3e-65 Identities = 349/485 (72%), Gaps = 0/485 (0%) Strand=Plus/Plus Query 50055 CCGCCCGGAAACTCCCAGTCAATGTCGACGCCGTCGAAAAATTTCCAAACTTGTAAAAAT 50114 ||||||||||| ||||||||||| || || ||||| || || ||||| ||| | ||| Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 50115 TCGCGAACCGACTCCACAAACACTTTTCTGATCGCGTCATCGTGCATGAAAAAGAATGGA 50174 || ||||| | || || || | | |||| | ||| | ||||||| |||| || Sbjct 113558 TCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGGG 113617 Query 50175 TCCGACAGAGTCCAACCGCCGATCGAAGGCAAAATTTTAATGTGCGGATGCGCCTTTTTG 50234 || |||| ||||| || ||||| ||||| | |||||| | || |||| || ||||| Sbjct 113618 TCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTTC 113677 Query 50235 ACGGCCATTAACTGACCAAAATTGCCTTTATACGGTTCGTTCCACGCGGACACTCCTTTT 50294 | ||||| | |||||||||||| |||||||| ||| | | | || |||| Sbjct 113678 AGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTGC 113737 Query 50295 TGCGGCTTCTGTATGGCGGCCCAAGGGTCGTGTATGGACACTTTAAAATCTTCCCGTCCC 50354 || ||| |||| | || ||||| || |||||||| | ||||||||||| | || ||| Sbjct 113738 TGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCCC 113797 Query 50355 GCACACGATCGCTGCAACGCCTCGAAACTGCCGGTGATGGTTTTGAGGCTGTCGTTGATA 50414 ||||| | || ||||| |||| |||||||| ||| |||| | |||||||| || Sbjct 113798 GCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTAATC 113857 Query 50415 CCGTCGCCGCCGCAAATGGGAATGAAACCGTACAACAGATGAGTTAAATTTGGCACAGGC 50474 ||||| ||||||||||| || |||| |||||||| | ||| || | || || |||| Sbjct 113858 CCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCAGGG 113917 Query 50475 ACTTTGTCCGCTGGAAAGTTGCGACCGTATACTCCCCACTCAACAAAGTATGCCGCCACG 50534 | ||| ||| | | || |||||| || || |||||||||||||| ||||| | ||| Sbjct 113918 ATTTTATCCACGGAGAATCCGCGACCATACACGCCCCACTCAACAAAATATGCGCCAACG 113977 Query 50535 ACTTT 50539 || || Sbjct 113978 ACCTT 113982 >seq48539 Length=7100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | ||||| |||||||| |||||||||||| Sbjct 6713 CCACCACGCAGACGGAGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAA 6654 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || | ||| || || ||| | || | | ||| ||||| || || Sbjct 6653 AGGGTGCGTCCATCCTCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGG 6594 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| ||| | |||| | ||||| | | |||||| Sbjct 6593 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACT 6534 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| |||| || || || || || || || ||||| ||||| Sbjct 6533 TCTAGAGTAATAGTCTTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 >seq8056 Length=34938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||||||| | || || || || || |||||||| ||| Sbjct 32131 TGCCTCCTCGGAGACGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGG 32072 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| | ||||| || ||| | || ||||| ||||||||||| | Sbjct 32071 AAAGGGTGCGACCATCTTCTAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAG 32012 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || || || || | |||| | || |||| || |||| Sbjct 32011 GAATTCCTTCTTTGTCTTGAATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAA 31952 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | || || | || || |||| ||||||||| || || ||||| Sbjct 31951 CCTCCAATGTGATCGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 31903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424577916423408