Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq223 185 2e-42 seq25848 143 7e-30 >seq223 Length=511576 Score = 185 bits (204), Expect = 2e-42 Identities = 282/398 (71%), Gaps = 19/398 (5%) Strand=Plus/Minus Query 41205 GATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAATCTAAGCATCGCCACA 41264 || || ||| |||| |||||||| | ||||||||||||||| || | | | || || Sbjct 459836 GACCCGGAAGTCCGCTACATGCCTAACGGCGGCGCGGTTGCCAACATCACTCTGGCAACG 459777 Query 41265 ACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAAACGGAATGGCACCGC 41324 |||| |||||| || ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 459776 TCTGAGAGCTGGCGTGACAAAGCCACCGGCGAGCAGAAAGAAAAAACGGAATGGCACCGT 459717 Query 41325 GTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTGCGCAAAGGTAGCAAG 41384 || || | ||||| || | |||||| | || ||||||||||| |||||| || Sbjct 459716 GTGGTGTTGTTCGGCAAATTAGCAGAAGTCGCAGGCGAATACCTGAAGAAAGGTTCTCAG 459657 Query 41385 GTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAGGCTGGCGTTGATCGC 41444 || | ||| |||||| |||| ||| ||||||||| || |||||||||||||| Sbjct 459656 GTCTACATCGAAGGCGCACTGCAAACCCGTAAATGGACCGATCAGGCTGGCGTTGAAAAA 459597 Query 41445 TACACCACTGAAATC------AACGTGGG------CATG--AATGGACGGTTGTTGATGC 41490 |||||||| ||| || |||||||| |||| ||| ||| | | ||| Sbjct 459596 TACACCACCGAAGTCGTCGTTAACGTGGGCGGCACCATGCAGATGCTCGGCGGCCG-TGC 459538 Query 41491 TGTCAGCGGCCAACGATAACCAGGCCGGTGGGCAAAGCCAGGGCAGCCAGCAAGGCGGAT 41550 | | ||||| || | | || |||| || | | ||| ||||||||||||| | Sbjct 459537 CGGCGGCGGCGCACCAGCAGGTGG-CGGTCAGCCATCCGCAGGCGGCCAGCAAGGCGGTT 459479 Query 41551 GGGGTAATCCGCAGCAGCCAACCCACAGCGGCAAACAG 41588 ||||| | || ||||||||| || ||||||| ||| Sbjct 459478 GGGGTCAGCCTCAGCAGCCA---CAAGGCGGCAACCAG 459444 >seq25848 Length=116905 Score = 143 bits (158), Expect = 7e-30 Identities = 204/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 41172 AACAAAGTAGAAATCATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGC 41231 |||||||| ||| | || || ||||| | | || || | || |||||||| | | Sbjct 107998 AACAAAGTCATCATCGTGGGTAATTTAGGTCAGGCACCGGAGCTGCGCTACATGCCGAAC 108057 Query 41232 GGCGGCGCGGTTGCTAATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACC 41291 ||||||||||| || | || | | ||||| | |||| |||| || ||| ||||| Sbjct 108058 GGCGGCGCGGTGGCGAGCCTGACGCTGGCCACGTCCGAAAACTGGCGTGACAAAGCCACC 108117 Query 41292 GGCGAGAAGAAAGAACAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAA 41351 |||||| || ||| |||| || ||||||||||| ||| | ||||| |||||||| ||| Sbjct 108118 GGCGAGCAGCGCGAAAAAACCGAGTGGCACCGCGTGGTCGTGTTCGGAAAGCTGGCCGAA 108177 Query 41352 ATTGCTAGCGAATACCTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACG 41411 ||||| | ||||||||| ||| || || || | ||| |||||| |||| || Sbjct 108178 ATTGCCGGTGAATACCTGACCAAGGGCGCAAAAGTCTACATCGAAGGCCAGCTGCAGACC 108237 Query 41412 CGTAAATGGCAGGACCAGGCTGGCGTTGATCGCTACACCACTGAAAT 41458 || ||||||||||| | || | || || |||||||| ||||| Sbjct 108238 CGCAAATGGCAGGATGCGCAGGGTATCGACCGTTACACCACGGAAAT 108284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133100713973424