Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq742 136 5e-27 seq6691 104 3e-17 >seq742 Length=196864 Score = 136 bits (150), Expect = 5e-27 Identities = 676/1054 (64%), Gaps = 33/1054 (3%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || || ||||| | || | ||| || || | ||| ||||| || || ||| | Sbjct 48191 CATCTGCCAGGCCTTGTATTCCAATACCGATGGGGCGGTGACGCATGTTCGATGTTCTAG 48132 Query 111111 CAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATC 111169 | ||| || || ||||| || ||| || | | ||| | |||||| || ||| || Sbjct 48131 CT-TCTGGTACAGGGTAAAAGTTAACGTCGATAATTTTGTTCAAATTTTTAGTGACAGTC 48073 Query 111170 TTTGT---GAT-TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATA 111225 || || ||| |||| | |||||| | || || | | ||| || ||||| Sbjct 48072 TTGGTTACGATCTTCA----GCTTTTCAAAGTCGAATACCTTATTATCTACAA--ACATA 48019 Query 111226 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 111285 ||| || |||| || ||||||||||| ||||| ||||| || ||||| || Sbjct 48018 --TTGACAG--CGATAGAGGCCAAATTGCAGACAGCTACTTCATCTTTGGAAGTGTATTC 47963 Query 111286 TAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 | |||||||| || | ||| | |||||| || |||| ||| | |||||| ||||| Sbjct 47962 AACTATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTCTT 47903 Query 111346 CTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAG 111405 ||||||||| |||||||| ||||||||||| || ||||| || || |||| || Sbjct 47902 TCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGAT 47843 Query 111406 AATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGT 111464 || ||| |||| || || ||| || | | | || | || || || || |||| Sbjct 47842 GATGGCCATCCACAAAGTCTGCGCCTTG-ATCTTCTTCTTAGAACGACCTTCGGCTTCGT 47784 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTG 111523 | |||||| || || ||||| || || ||| | || ||| | || || || | | Sbjct 47783 AGCGTGTGTACAGAGCCTCAAATTCTTCTCCC-CAGCACTCGTGTAAGCCGGGAGCATCG 47725 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTG 111581 | || || | ||| ||| | || | || ||| || ||||||||||| || || | Sbjct 47724 TGGGGGCACATGAGACTCCAAT--CCTCGTTGCTCTCGACACGCTTCATGAACAGATCGG 47667 Query 111582 GAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGT 111640 | ||||||| | | || | || | | || ||| | || || | || || | Sbjct 47666 GGATCCACAAGCCGTAGAATAAGTCACGTGCA-CGAACTTCCTCCTTTCCAGTATTCTTT 47608 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 111700 || || | ||| || | || ||||||||||| ||||||| || | |||| || | Sbjct 47607 TTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAGCT 47548 Query 111701 C----CCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 | ||| | | || | || | ||||||||| || ||| || | || || || Sbjct 47547 CCGGGCCTCTTG-TTTCCTCCCTGGTCTACATAGCGGGCCGTGTTATTGTACACACGCAG 47489 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| || | | |||| || || || || ||| || || ||||||| Sbjct 47488 CATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGCGATGTAGGAACCCTTGGCTCG 47429 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | || | || | || ||||| ||||| |||| || | | ||||||| | | Sbjct 47428 GATGCAGTGTACATGAAGGCCGATACCTCCAGCAGACTTGGAAACCAGGGCACACTGCTT 47369 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 || || | ||||| || | || || || | |||| | ||||||||| || Sbjct 47368 CAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCATGGCCAGTAGGAAGCAAGAAGA 47309 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATAC 111995 || ||| || | || || | || ||| || || || | |||||| |||| || Sbjct 47308 CAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAAGTATTT 47249 Query 111996 CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 | | |||| || ||| || || | | | ||||||||||||||||||||||| |||| Sbjct 47248 C-TCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCAATGTCTTCCCCGTGGATACCGA 47190 Query 112056 TTGCGACCCGCATGAACATGTACTGTGGGGTTTC 112089 | |||| ||||| ||||| || || |||| Sbjct 47189 CAGATACCCTCATGAGCATGTGTTGCGGTCTTTC 47156 >seq6691 Length=42033 Score = 104 bits (114), Expect = 3e-17 Identities = 340/515 (66%), Gaps = 14/515 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| ||| |||||| |||||||||||||| || || ||| || | ||||| Sbjct 13925 TATTCCCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCATGTCCATG 13984 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 ||| || || ||||| | | | | || |||||| || | | | ||| || Sbjct 13985 AAGCTGAAGGGGTTCTTGGA-TCCGTAGTGCTTGGCACAGCCCAGGTCCACCAAGAGCCG 14043 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | |||| | ||||| |||| |||||| || ||||||| || | || | Sbjct 14044 GTCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGAC 14103 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || || ||||| || ||| ||| ||||| || || || || ||||| || | Sbjct 14104 GGGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAG 14163 Query 122610 GATAGTTTCGGTAGTGGGTCTAT-TACGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCC 122667 || | ||| ||||| | | ||| | || ||||| | | || |||||| || Sbjct 14164 GACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGT-TTGAACATGAGGCA-GGCAAAGTCG 14221 Query 122668 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGA 122727 |||||||||||| |||||||| || | || || |||| | || |||||||| Sbjct 14222 CAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGG 14281 Query 122728 CCCCGCTTCTTCAACCAATAAATAG-CGCAGAA-TGACCCGGAGAAGAAGATACCCTCCA 122785 || |||||||||| |||| | || | ||| || || |||||||||||||| || || | Sbjct 14282 CCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTG--CCGGAGAAGAAGATTCCTTCTA 14339 Query 122786 CACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG--CGAGACTTTGCATCAAACCATTT 122843 | || || || || | | || || |||||| | || | | ||| | | ||| | Sbjct 14340 CGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGC--CGATCCACTG 14397 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTA 122878 || ||||| | |||||||||| | ||| |||| Sbjct 14398 CAGGGCCCAGTCTGCCTTCTTCTTCACACACGGTA 14432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627491625566400