Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6691 123 3e-23 seq22220 86.0 8e-12 >seq6691 Length=42033 Score = 123 bits (136), Expect = 3e-23 Identities = 347/521 (67%), Gaps = 14/521 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||||||| ||||||||||||||| ||||| || |||| | ||| | ||||| Sbjct 13925 TATTCCCCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCTTCCAGGGAGATCATGTCCATG 13984 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCT-GGCACT-CCAATCTGTTTGAGGAGAC 129845 || || |||||||| || ||| | |||| ||||| || | | | ||| | Sbjct 13985 AAGCTGAAGGGGTTCTTGGA--TCCGTAGTGCTTGGCACAGCCCAGGTCCACCAAGAGCC 14042 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | || | ||||| |||| |||||| ||| ||||||| || | || | Sbjct 14043 GGTCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGA 14102 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 || || ||||| || ||| | | |||||| ||||| ||| ||||| || Sbjct 14103 CGGGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTA 14162 Query 129966 GAATGGTC-TCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGA-GTTCCACGGCAAACT 130022 | | || | || | | || | || | |||| || ||| | | || |||||| | Sbjct 14163 GGAC--TCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCA-GGCAAAGT 14219 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||||||||||||||| |||||||| | || || |||| || || ||||||| Sbjct 14220 CGCAGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGA 14279 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || |||||||||| ||| || || | ||| ||| ||||||||||| || || | Sbjct 14280 GGCCACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTA 14339 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG--CGGGACTTTGTATCAAACCACTT 130200 | || ||||| || | | |||||| | |||| | || | | || | | ||||| Sbjct 14340 CGCAAGCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTG--CCGATCCACTG 14397 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCT 130241 || ||||| | ||||| |||| | |||||| | ||||| Sbjct 14398 CAGGGCCCAGTCTGCCTTCTTCTTCACACACGGTAGGGTCT 14438 >seq22220 Length=17734 Score = 86.0 bits (94), Expect = 8e-12 Identities = 275/416 (66%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 14057 ATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTC 14116 |||| | ||| || ||||| || || | ||| || | || || ||||| | | ||| Sbjct 1916 ATCTGTCTATCGAAACGACCGGGACGCAAGAGAGCTTTATCTAGAATATCTACTCTGTTG 1857 Query 14117 GTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAG-AG 14175 || || || | |||||| | | || | | | |||||| ||||||||| |||| || Sbjct 1856 GTAGCGGCAAGGACAACCACGTTTGTGGTGGTGTTAAAGCCGTCCATCTCAA-CAAGCAG 1798 Query 14176 TTGATTGATGGTTTGTTCGCGTTCATCAT-TCGC---AGGCATACCACCCGCACTGCGTT 14231 ||| |||| || | || ||||| | || | | || | | ||||| || || Sbjct 1797 TTGGTTGAGAGTGTTCTCTTGTTCAGAGTGTCCCCCGAAGCTT--CGCCCGCCTCGC-TT 1741 Query 14232 GCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAA 14291 ||| || ||||||||||| ||||||||||| | || || || | | || || Sbjct 1740 CCTTCCC-ACGGCGTCAATCTCATCGATGAACAGAATGCAGGGAGCGTGCTTGCGTGCCT 1682 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 | || || |||| ||| || || || || ||||||||||| |||| || | || Sbjct 1681 GGGCGAACATGTCTCTCACCCTGGAGGGGCCTACTCCCACAAACATTTCCAGGAACTCGG 1622 Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | ||| ||| || || |||||| || || | ||| ||||| | || |||||| || Sbjct 1621 AGCCGG-ACACTGTGAGGAAGGGCACATTGGCTTCTCCCGCAGTAGCCTTGGCGAGCAGC 1563 Query 14411 GTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 ||||| || || ||||| |||| ||| | || || |||||| |||| || Sbjct 1562 GTCTTACCAGTTCCTGGAGGTCCTGTGAGCATAGCTCCCTTGGGGATCTTGGCTCC 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617903082893040