Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq742 163 3e-35 >seq742 Length=196864 Score = 163 bits (180), Expect = 3e-35 Identities = 1102/1743 (63%), Gaps = 45/1743 (3%) Strand=Plus/Plus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| || || ||||| ||||| | || | ||||||| || ||||||||||||||| Sbjct 47156 GAAAGACCGCAACACATGCTCATGAGGGTATCTGTCGGTATCCACGGGGAAGACATTGAT 47215 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG-TTCATTCACGCAACACCAAC 104334 || | | | || || ||| || |||| | | || |||| |||||| | || || Sbjct 47216 TCAGCCATTGAAACTTACAACCTTCTGTCAGA-GAAATACTTCACTCACGCCAGCCCTAC 47274 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 || ||| || | || || | || || |||| ||||||||| | |||| | Sbjct 47275 TCTATTCTCCGCAGCCACGCCCCGTCCTCAGCTGTCTTCTTGCTTCCTACTGGCCATGAG 47334 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 104454 || || || | || ||||| | || || | | ||||||| | | || |||| Sbjct 47335 CGATGATAGTATTGAAGGGATCTACGACACCCTGAAGCAGTGTGCCCTGGTTTCCAAGTC 47394 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 ||||| ||||| || | || | || | ||||||| || || ||| Sbjct 47395 TGCTGGAGGTATCGGCCTTCATGTACACTGCATCCGAGCCAAGGGTTCCTACATCGCGGG 47454 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || || || |||| | | || ||||| || || | || ||| || || Sbjct 47455 TACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCGTGTGTACAATAACACGGCCCG 47514 Query 104575 CTATGTAAATCAAGCTGGGCGTCGAAAGG----GATCTATCGCAGTCTATCTTGAGCCAT 104630 ||||||| | || | || | | ||| || || |||| | || ||||||| | Sbjct 47515 CTATGTAGACCAGGGAGGAAA-CAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGCCGT 47573 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||||||||| || | || ||| | || ||| || || | ||||| | | Sbjct 47574 GGCACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAGTTC 47633 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 |||| || || | |||| || | ||||| || ||||| ||||||||| | || ||| Sbjct 47634 -GTGCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCGAG 47692 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGT 104808 | | ||||| |||| | || || || | || || || | ||| ||| | Sbjct 47693 AGCAACGAGGATTGGAGTCTCATGTGCCCCCACGATGCTCCCGGCTTACACGAGTGCTG- 47751 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 ||| || || ||||| || || |||||| ||||| | |||||||| | | || Sbjct 47752 GGGAGAAGAATTTGAGGCTCTGTACACACGCTACGAAGCCGAAGGTCGTTCTAAGAAGAA 47811 Query 104869 GGTGCCAGCTGCCGA-TGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | | | || || || | |||||| || || || | |||||| || || || || | Sbjct 47812 GAT-CAAGGCGCAGACTTTGTGGATGGCCATCATCGAATCTCAAGTAGAAACGGGAACCC 47870 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | |||||||| ||||| ||||| || |||| |||||| || ||| | ||| |||| | Sbjct 47871 CCTACATGCTGTACAAGGACGCGTGCAACCGAAAGAGCAACCAACAAAATCTGGGAACTA 47930 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 | ||| | || ||||| |||||||| | |||| || ||||||||| |||| Sbjct 47931 TTAAGTGCAGTAACCTCTGCACAGAAATAGTTGAATACACTTCCAAAGATGAAGTAGCTG 47990 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || || | || || |||||| || | ||||| | ||| | ||| ||| | Sbjct 47991 TCTGCAATTTGGCCTCTATCGCTGTC----AATATGT--TTGTAGATAATAAGGTATTCG 48044 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | |||||| || | || || || |||||||| ||||| | |||| | |||| | Sbjct 48045 ACTTTGAAAAGCTGAAGATCGTAACCAAGACTGTCACTAAAAATTTGAACAAAATTATCG 48104 Query 105168 ATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 | || |||||||| || ||| ||| | | ||| || ||| | ||||| || || Sbjct 48105 ACGTTAACTTTTACCCTGTACCAGA-AGCTAGAACATCGAACATGCGTCACCGCCCCATC 48163 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTT--TG---TCGCCACGCATTTG 105281 ||| | || | || || || || |||| || |||| || | || | |||| Sbjct 48164 GGTATTGGAATACAAGGCCTGGCAGATG-CTTTTGTCTTAATGAGATTGC----CTTTTG 48218 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || |||| || | ||| | ||||||||||| ||||| ||| |||| Sbjct 48219 AGAGTGAAAAAGCCCAGCTTCTGAATCAACAAATATTTGAGACATTGTATTACGGTGCTC 48278 Query 105342 TTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 | || || |||| ||| |||| ||| || ||| |||| || || | || | || Sbjct 48279 TGGAAGCAAGTTGCGAGCTGGCCGAGAAGGAGGGTACATACGAGACGTACCCAGGATGTC 48338 Query 105402 CAG-CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGCTTCACTA 105459 | | | || ||||| | ||||||| ||| |||||||| || | | || || | Sbjct 48339 CTGTCAGCA-AAGGGATTCTTCAATATGAGATGTGGGACAAGAAGCCTACAGATT-TGTG 48396 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 |||||| || | || | ||| | | || | | ||| || || | Sbjct 48397 GAACTGGGCTGCCTTGAAAGCTAAGATCGCGATACACGGAGTCAGGAACTCGCTGCTTCT 48456 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 || || ||||| || ||||||||||| || || || || || || |||| ||||||||| Sbjct 48457 CGCACCCATGCCTACCGCCTCCACCGCCCAGATTTTAGGAAACAACGAATCCTTTGAACC 48516 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 105639 || ||| | |||||||| ||||| | | | ||||| || | |||| || | Sbjct 48517 CTTCACTTCCAACATCTACACCAGAAGGGTCTTGTCTGGAGAATTCCAGGTTGTGAATCA 48576 Query 105640 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCAT 105699 ||||| || ||| | | ||| || | | ||| | | || ||||| ||||||| Sbjct 48577 CCATCTACTGCGTGATTTGACCGAGGCTGATTTGTGGGACGACGACATGAAAAATCTCAT 48636 Query 105700 -GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGT 105758 || | | || ||||||||||| | | || || || | || | | Sbjct 48637 CATTGCCAAC-AACGGATCCATTCAAAACCTGGACAGAATACCCAAGCACATCAGAGATC 48695 Query 105759 TGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAGATC 105815 | ||| |||||||||||||| ||| | || | | || | ||||| || || | Sbjct 48696 TCTACAAGACAGTTTGGGAAATTTCCAACA--AAATA-CTGATCAAGATGGCAGCCGACC 48752 Query 105816 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGG-AAAGTCCAACGATG 105874 | || ||| ||||| |||||||| | || | | ||| | || ||||| | | Sbjct 48753 GAGGAGCCTTTATTGACCAAAGTCAGTCCTTCAACATACACGTGGCAGAGCCCAACTACG 48812 Query 105875 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 105934 |||||| ||||||| ||| | || | ||||||| ||| | || || || |||||| Sbjct 48813 -GAAAGCTCACTTCTATCCACTTCTATGGCTGGAAGATGGGCTTGAAGACTGGAATGTAT 48871 Query 105935 TAC 105937 ||| Sbjct 48872 TAC 48874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582758947826160