Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq742 132 5e-26 seq6691 109 6e-19 >seq742 Length=196864 Score = 132 bits (146), Expect = 5e-26 Identities = 340/505 (67%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 19188 AGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGA 19247 |||| | |||||| ||||| | || || || ||| ||| | ||| | || ||| Sbjct 47247 AGAAATACTTCACTCACGCCAGCCCTACTCTATTCTCCGCAGCCACGCCCCGTCCTCAGC 47306 Query 19248 TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGC 19307 |||| || |||||| |||| |||| ||||| || ||||| || |||||||| || | Sbjct 47307 TGTCTTCTTGCTTCCTACTGGCCATGAGCGATGATAGTATTGAAGGGATCTACGACACCC 47366 Query 19308 TCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAAT- 19366 | ||| |||| || | | ||||||| | || |||||||| | || || | | | Sbjct 47367 TGAAGCAGTGTGCCCTGGTTTCCAAGTCTGCTGGAGGTATCGGCCTTCA-TGTAC-ACTG 47424 Query 19367 -ATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCC 19425 ||||| | | ||| | ||| || || |||||||| || | || | ||||| Sbjct 47425 CATCCGAGCCAAGGGTTCCTACATCGCGGGTACTAACGGAGTCTCCAATGGGTTGGTCCC 47484 Query 19426 AATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAA-ACGCA 19484 ||||| || || | ||| ||||||||| | || || ||||||| || ||| | || Sbjct 47485 CATGCTGCGTGTGTACAATAACACGGCCCGCTATGTAGACCAGGGAGGAAACAAGAGGCC 47544 Query 19485 AGG-GCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAA 19543 || ||| ||||| || ||| | ||||| |||||||||||| | | || ||| | || Sbjct 47545 CGGAGCT--TTCGCTATTTACGTTGAGCCGTGGCACGCGGACATATTTGAATTCTTAGAC 47602 Query 19544 CTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTG 19602 || ||| || | ||||| | || || ||| | ||| |||| |||||| Sbjct 47603 TTGAAAAAGAATACTGGAAAGGAGGAAGTTCGTGCACGTGACTTATTCTACGG-CTTGTG 47661 Query 19603 GATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCC 19662 ||| || || || |||||| || || |||| |||| || ||| || |||||||| Sbjct 47662 GATCCCCGATCTGTTCATGAAGCGTGTCGAGAGCAACGAGGATTGGAGTCTCATGTGCCC 47721 Query 19663 GCACGAATGC-CCTGGCCTACCCGA 19686 |||| |||| || ||| ||| ||| Sbjct 47722 CCACG-ATGCTCCCGGCTTACACGA 47745 Score = 127 bits (140), Expect = 2e-24 Identities = 462/710 (65%), Gaps = 10/710 (1%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 ||||||||||| | ||| |||| || || || | || | ||||||||||| | Sbjct 47958 ATTTCTGTGCAGAGGTTACTGCACTTAATAGTTCCCAGATTTTGTTGGTTGCTCTTTCGG 47899 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGA-GAAC 79223 || || ||||||||||| |||||| || || || || || || ||| | || || Sbjct 47898 TTGCACGCGTCCTTGTACAGCATGTAGGGGGTTCCCGTTTCTACTTGAGATTCGATGATG 47839 Query 79224 GCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTA-CG 79282 ||| ||| | ||| | ||| || |||||| | ||||| | || |||| || Sbjct 47838 GCCATCCACAAAGTCT-GCGCCTTGATCTTCTTCTTAGAACGACCTTCGGCTTCGTAGCG 47780 Query 79283 TCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGG-GCACTCGTGC 79341 | | |||| | | || | || || || ||| | | ||| || ||| ||||| Sbjct 47779 TGTG-TACAGAGCCTCAAATTCTTCTCCCCAGCACTCGTGTAAGCCGGGAGCA-TCGTGG 47722 Query 79342 GGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATC 79401 |||||||| || ||| ||||||| |||| || || |||||| || || |||||| Sbjct 47721 GGGCACATGAGACTCCAATCCTCGTTGCTCTCGACACGCTTCATGAACAGATCGGGGATC 47662 Query 79402 CACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAG 79460 |||| | |||| ||| | ||| || ||| | ||||| | || ||| || Sbjct 47661 CACAAG-CCGTAGAATAAGTCACGTGCACGAACTTCCTCCTTTCCAGTATTCTTTTTCAA 47603 Query 79461 CTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTT 79520 || | || || | ||||| |||||||||||||| | || || ||||| | || Sbjct 47602 GTCTAAGAATTCAAATATGTCCGCGTGCCACGGCTCAACGTAAATAGCGAAAGCTCCGGG 47543 Query 79521 GCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGG 79580 | |||| || ||||||| || || ||||||||||| ||| | || || |||||||| Sbjct 47542 CCTCTTGTTTCCTCCCTGGTCTACATAGCGGGCCGTGTTATTGTACACACGCAGCATGGG 47483 Query 79581 CACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTT 79640 || | || | || ||| ||||| || || ||| | ||| | || || ||| Sbjct 47482 GACCAACCCATTGGAGACTCCGTTAGTACCCGCGATGTAGGAACCCTTGGCTCGGATG-C 47424 Query 79641 CGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCG 79699 | | | || | ||||| || || | ||||||| | | || |||| ||| || | Sbjct 47423 AGTGTACATGAAGGCCGATACCTCCAGCAGACTTGGAAACCAGGGCACACTGCTTCAGGG 47364 Query 79700 TCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCT 79759 | |||||||| || || || || || |||| || | |||||||| |||| || Sbjct 47363 TGTCGTAGATCCCTTCAATACTATCATCGCTCATGGCCAGTAGGAAGCAAGAAGACAGCT 47304 Query 79760 GTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 | || | ||| | ||| ||| || || || | ||||| |||||| Sbjct 47303 GAGGACGGGGCGTGGCTGCGGAGAATAGAGTAGGGCTGGCGTGAGTGAAG 47254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 20342 GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATG 20401 ||| | || | | ||||| || ||||| | | |||||| |||| |||| |||||| Sbjct 48407 GCCTTGAAAGCTAAGATCGCGATACACGGAGTCAGGAACTCGCTGCTTCTCGCACCCATG 48466 Query 20402 CCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACC 20461 || |||||||| ||||||||||| | || |||||||| | || || || | ||| || Sbjct 48467 CCTACCGCCTCCACCGCCCAGATTTTAGGAAACAACGAATCCTTTGAACCCTTCACTTCC 48526 Query 20462 AACATCTAC 20470 ||||||||| Sbjct 48527 AACATCTAC 48535 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 ||||||||||| ||| | || || || | |||||||| || | ||||||||||| || Sbjct 48535 GTAGATGTTGGAAGTGAAGGGTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGA 48476 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCC 78628 |||||| ||||||||||||| || || || |||| Sbjct 48475 GGCGGTAGGCATGGGTGCGAGAAGCAGCGAGTTCC 48441 >seq6691 Length=42033 Score = 109 bits (120), Expect = 6e-19 Identities = 103/129 (80%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCT 60049 || || || ||||| ||||||||||||||||| ||| ||| || | || || ||||| Sbjct 14352 GCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCA-GTTTTGCCTCCATCTTTTGGCT 14294 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||||||||||||||||| ||| ||| ||| ||||||| |||| ||||| ||||| Sbjct 14293 GAAGAAGCGTGGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGAGACGA 14234 Query 60110 GGGCCTCCA 60118 ||| ||||| Sbjct 14233 GGGTCTCCA 14225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548052835548960