Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq742 174 2e-38 seq21774 104 3e-17 >seq742 Length=196864 Score = 174 bits (192), Expect = 2e-38 Identities = 453/672 (67%), Gaps = 14/672 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 || ||||| || ||||||| || || || ||| ||| | ||| | |||||| || Sbjct 47249 AAATACTTCACTCACGCCAGCCCTACTCTATTCTCCGCAGCCACGCCCCGTCCTCAGCTG 47308 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||| |||| |||| ||||| || || || |||||||| || || Sbjct 47309 TCTTCTTGCTTCCTACTGGCCATGAGCGATGATAGTATTGAAGGGATCTACGACACCCTG 47368 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTCGAACGT 53445 ||| ||||||||| | ||||||| | || |||||||| | || | | | | | Sbjct 47369 AAGCAGTGTGCCCTGGTTTCCAAGTCTGCTGGAGGTATCGGCCTTCATGTACACTG-CAT 47427 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 ||| || || || | ||| ||| || ||||| ||| || |||| | || || || Sbjct 47428 CCGAGCCAAGGGTTCCTACATCGCGGGTACTAACGGAGTCTCCAATGGGTTGGTCCCCAT 47487 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| || || | ||| ||||||||||| || || ||||||| || ||| | || Sbjct 47488 GCTGCGTGTGTACAATAACACGGCCCGCTATGTAGACCAGGGAGGAAACAAGAGGCCCGG 47547 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | ||||| || ||| | |||||||||||||| ||||| | || || | || || Sbjct 47548 AGCTTTCGCTATTTACGTTGAGCCGTGGCACGCGGACATATTTGAATTCTTAGACTTGAA 47607 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATT 53683 |||| || | || || | || ||| |||||| | || ||| ||| ||||||| Sbjct 47608 AAAGAATACTGGAAAGGAGGAAGTTCG-TGCACGTGACTTATTCTACGGCT-TGTGGATC 47665 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || || || |||||| | || |||| ||||||| ||| || |||||||| || Sbjct 47666 CCCGATCTGTTCATGAAGCGTGTCGAGAGCAACGAGGATTGGAGTCTCATGTGCCCCCAC 47725 Query 53744 GAGTGC-CCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG- 53800 || ||| |||||| | || | ||| || || || || ||| | | |||| | ||| Sbjct 47726 GA-TGCTCCCGGCTTACACGAGTG-CTGGGGAGAAGAATTTGAGGCTCTGTA-CACACGC 47782 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGAT-GCAAT 53859 |||| || | || || | ||||||||| ||||||||| || | |||| || || Sbjct 47783 TACGAAGCCGAAGGTCGTTCTAAGAAGAAGATCAAGGCGC-AGACTTTGTGGATGGCCAT 47841 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 | || | || || || |||||||| || |||||| |||||||| || |||| Sbjct 47842 CATCGAATCTCAAGTAGAAACGGGAACCCCCTACATGCTGTACAAGGACGCGTGCAACCG 47901 Query 53920 GAAGAGCAACCA 53931 ||||||||||| Sbjct 47902 AAAGAGCAACCA 47913 >seq21774 Length=17217 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| ||||| || | ||| || |||||||| || | ||||| || |||||||| Sbjct 2763 GTGAAAATGTAACGAGGGCTCGCACTGTCCTTGCCTCCCGACAGCCTGGTACCAAACTGA 2704 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||||| || ||||||| ||| |||| ||| ||| | ||||||||||| || || Sbjct 2703 CCTCGGGGCTCCAGCAGGTTGATGTTATTGGAGCCAACGTAGTTCTGAGCCAAGTTGACG 2644 Query 152149 ATCGTGCCCTGCA----GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 || ||| ||| |||| ||| |||||||| || || | ||||| || | | Sbjct 2643 ATAGTG--GAGCAAAGGGACT--GTTCCCCGTGGTGGTAGGCGGAATGCTCAGCAACCGA 2588 Query 152205 TCCCGCCAACTGCGCCACCTT 152225 || |||||||||||||| || Sbjct 2587 GCCGGCCAACTGCGCCACTTT 2567 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| ||| |||||||| || | || | ||||| || || Sbjct 2763 GTGAAAATGTAACGAGGGCTCGCACTGTCCTTGCCTCCCGACAGCCTGGTACCAAACTGA 2704 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||||| ||||| | ||| |||| ||| || |||| |||||||||||||| Sbjct 2703 CCTCGGGGCTCCAGCAGGTTGATGTTATTGGAGCCAACGTAGTTCTGAGCCAAGTTGACG 2644 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||| | || || ||||| || || | ||||| || || |||| Sbjct 2643 ATAGTGGAGCAAAGGGACTGTTCCCCGTGGTGGTAGGCGGAATGCTCAGCAACCGAGCCG 2584 Query 117485 GCCAGCTGAGCCACCTT 117501 |||| ||| ||||| || Sbjct 2583 GCCAACTGCGCCACTTT 2567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546745161673200