Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq48539 168 8e-37 seq8521 161 1e-34 seq4062 141 1e-28 seq8056 131 2e-25 >seq48539 Length=7100 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| |||||||| |||||||||||||| || |||||| | | Sbjct 6487 ATGCAGATCTTCGTAAAGACCCTTACCGGAAAGACTATTACTCTAGAAGTTGAGCCTTCT 6546 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || || || |||||||| ||||| |||||||| ||| Sbjct 6547 GACACAATTGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 6606 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || ||||| | ||||||| || ||||| | ||||| ||| Sbjct 6607 CAGAGGTTGATCTTCGCAGGAAAGCAGTTGGAGGATGGACGCACCCTTTCCGACTACAAT 6666 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||| ||||| || ||||| | ||| | ||||| || |||||| Sbjct 6667 ATCCAAAAAGAATCTACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGA 6714 Score = 165 bits (182), Expect = 9e-36 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| ||||| ||||| || || || | || ||||| | Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| |||| | |||||||| ||||| |||||||| |||||||| ||||| || Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || |||||| | || |||| |||||||| | ||||| || Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||||||| || || ||||| | ||| | ||||| || |||||| Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGA 6942 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || |||||||| || ||| | ||||| ||| | Sbjct 6259 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTCC 6318 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| |||||||| ||||| || || || |||||||| ||| Sbjct 6319 GATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAG 6378 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||| ||||| | || || | || ||||| | || || ||| Sbjct 6379 CAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAAT 6438 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| || || | || | ||||| || || || Sbjct 6439 ATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGG 6485 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| || || || || || || || || ||||||||| | Sbjct 6942 AATGCAAATCTTCGTCAAGACTCTGACTGGTAAAACCATAACACTCGAGGTTGAGCCCTC 7001 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| |||| | || || || || || |||||||| || ||||| ||||| || Sbjct 7002 AGATACCATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCA 7061 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||| | | || ||||||||||||||||| || |||| Sbjct 7062 GCAGAGGTTGATCTTTGCTGGTAAGCAACTTGAAGATG 7099 >seq8521 Length=40141 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| ||||| || |||||||| | Sbjct 2247 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACACTGGAGGTTGAACCCTCG 2306 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || |||| ||| | ||||| ||||| ||||||||||| || || || ||||| ||| Sbjct 2307 GACAGTATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCCCCAGATCAG 2366 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || || |||| || || || | ||||| || Sbjct 2367 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 2426 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| | ||||| || ||||| Sbjct 2427 ATCCAGAAGGAGTCCACACTCCATCTTGTCCTACGTCTGCGTGGTGG 2473 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| |||||||||||||| || || || ||||||||| | | Sbjct 2019 ATGCAGATTTTCGTGAAGACCCTTACCGGCAAGACAATCACCCTAGAGGTTGAGCCCTCT 2078 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||| || || || ||||| ||||| || || || ||||| ||| Sbjct 2079 GACACAATTGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 2138 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || ||||| || || |||| |||||||| | |||||||| Sbjct 2139 CAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTCTCTGACTATAAC 2198 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||||||||| | ||| | ||||| || ||||| Sbjct 2199 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTCCGTCTCCGTGGTGG 2245 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || ||||| ||||| || || || ||||||||| | Sbjct 2703 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACCATCACCCTAGAGGTTGAGCCCTCA 2762 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||| || || || ||||| ||||| || || || ||||| ||| Sbjct 2763 GACACAATTGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 2822 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || |||||| | || |||| |||||||| | ||||| || Sbjct 2823 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCCGACTACAAC 2882 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||| || || || ||||| | ||| | ||||| || |||||| Sbjct 2883 ATCCAAAAAGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGA 2930 Score = 122 bits (134), Expect = 1e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| |||| | || || || || || |||||||| || ||||| ||||| |||||| | Sbjct 1856 CATTGAAAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAGCAGAG 1915 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 | || ||||||||||||||||| || |||| ||||||||| | ||||| || | || Sbjct 1916 GTTGATCTTTGCTGGTAAGCAACTTGAAGATGGTCGTACCCTCTCTGACTACAACATTCA 1975 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || ||||| | ||| | ||||| || || || Sbjct 1976 GAAGGAATCTACCCTTCACTTGGTCCTCCGTCTCCGAGGAGG 2017 >seq4062 Length=67394 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || ||||||||||| || || ||||| ||| | Sbjct 48161 ATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGCCT 48220 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| | ||| | | || | ||||| || || || || ||||| ||||| || |||||| Sbjct 48221 TCTGACACCATCGAACATGTCAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCCAGAC 48280 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | || || || || || ||||| || || |||| | || || | ||||| Sbjct 48281 CAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCGGACTAC 48340 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || |||| ||||| ||||| || || || || || | |||||||||||| Sbjct 48341 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGAGGCTTCGCGGTGGA 48391 >seq8056 Length=34938 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || || || | ||||| ||||| || || | ||||||||| | Sbjct 31900 ATCATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCC 31959 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| || | |||| | ||||| |||||||| ||||| || ||||||||||| || Sbjct 31960 TCAGATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGAT 32019 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||||| || || ||||| || ||| | || |||| ||| ||||| | || || Sbjct 32020 CAACAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTAC 32079 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||| ||||| || || || ||| | || | ||||| || || || Sbjct 32080 AATATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGG 32129 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||||||||| ||||| || || ||| | Sbjct 32359 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACTCTCGAAGTGGAGCCCTCC 32418 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | |||||||| ||||| || ||||| || || || ||||| ||| Sbjct 32419 GACACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGTATCCCACCAGATCAG 32478 Query 27526 CA 27527 || Sbjct 32479 CA 32480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569819690674080