Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq785 114 5e-21 seq19589 111 6e-20 >seq785 Length=396209 Score = 114 bits (126), Expect = 5e-21 Identities = 89/102 (87%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 27102 TACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATA 27159 |||||| || |||| || || ||||||||||||||||| ||| ||||| |||||||||| Sbjct 187992 TACCGT-ATAATCCCGCACCTCGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATA 187934 Query 27160 ATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 27201 ||||| |||||||||||||| ||||||||||||||||| || Sbjct 187933 ATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAAT 187892 >seq19589 Length=24186 Score = 111 bits (122), Expect = 6e-20 Identities = 295/449 (66%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 32101 ATCCTCGACCAGTTTCTGGATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGT 32160 ||||||| || ||||| ||||||||||||||||| ||||| || | ||||| Sbjct 19197 ATCCTCGGACAATTTCTTGATGAAAAGGAAGGTAATAGTCTGACGGCTTATCAGGATGGC 19256 Query 32161 GCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCT 32220 | ||| |||||||| || ||||| || | ||||| | ||||| ||||| || | Sbjct 19257 GTGGGGATCTGGACAATTTGCCGCGGCGTTACCCGCATTGATGGGCGCCCTGT--TTACA 19314 Query 32221 --GGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGG 32278 ||||||| || | || || |||| || ||| | ||| |||||| Sbjct 19315 AAGGCATGACATTGACTGCGGCGAAGTGCGCAGATGTGAACAAATTGGAATCCAATAAGG 19374 Query 32279 CGCTGGCATGGGTGGAGCGTAATATAAAAGTTCCACTGACCGAGCCACAAAAAGCAGGTA 32338 || | | ||||| | |||| | | || | ||||| |||| |||| || |||| Sbjct 19375 CGATAGAGTGGGTTAAAACTAATGTCACTGTCACGCTGACTCAGCCGCAAATTGCCGGTA 19434 Query 32339 TCGCGTCATTTTGCCCCTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATA 32398 |||| |||||||||||||| |||||||| || | || || ||| | || ||||| || | Sbjct 19435 TCGCATCATTTTGCCCCTACAACATTGGACCGGCGAAATGCTTCACTTCAACGTTCTACA 19494 Query 32399 AGCGGCTTAATGCAGGCGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGG 32458 | || ||||| || ||| | || || |||| | || ||||| | | Sbjct 19495 AAAAACTAAATGCCGGAGATAAACGTGGTGCCTGTGCTGAAATAAAGCGGTGGGTACGCG 19554 Query 32459 ACGGTGGCAGAGACTGCCGTATCCGTTCAAACAACTGTTACGGTCAGGTATCAAGACGTG 32518 | | ||| | ||||||| | ||| ||| || || | || ||||| | | |||| Sbjct 19555 ATGATGGGAAAGACTGCAATGCCCGGGAAAATAATTGCTTTGGGCAGGTGATACGCCGTG 19614 Query 32519 ACCAGGAGAGTGCGCTGGCATGCTGGGGT 32547 | ||||| || | || ||||||||||| Sbjct 19615 ATCAGGAAAGCGAACTAACATGCTGGGGT 19643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203125452063220