Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq15718 98.7 8e-16 >seq15718 Length=23337 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/222 (72%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || ||||| | || ||||| | || || || || ||| ||||||||| || || || Sbjct 3063 CCTGTGACCCGTGCGATCATATGAGTCAGCAGGGAATAGGAGGCGATGTTGAAAGGGACT 3122 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGA-GCTCTCCGTCGCTCAC 30063 || || |||||||| | | ||||||||||||||| || | || | || ||| ||| Sbjct 3123 CCCAGGCCCATGTCGGCGCTGCGCTGGTAGAGCTGACAGGACAGGCGCCCCTCCGC-CAC 3181 Query 30064 GTAAAACTGACACATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGT 30122 ||| ||||| ||| ||| ||||||||| || || ||||| ||| |||| | | | || Sbjct 3182 GTAGAACTG-CACCAGGCAGTGGCACGGGGGCAGGGCCATCAGGGGCAAGGCCTGCGCGT 3240 Query 30123 TCCAGGCGCACACGATGATGCGCCTGTCTTCTGG-GTTGTTC 30163 ||| | ||||| | ||||||| ||| || || |||||| Sbjct 3241 CCCACGAGCACAGCACCATGCGCCGGTCATCAGGATTTGTTC 3282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405969540364728