Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq223 221 1e-52
seq8056 159 3e-34
seq48539 156 4e-33
seq8521 145 7e-30
seq15643 104 2e-17
>seq223
Length=511576
Score = 221 bits (244), Expect = 1e-52
Identities = 361/516 (70%), Gaps = 8/516 (2%)
Strand=Plus/Plus
Query 54051 GCCCACGGACGGATTGGCACCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATC 54110
||||| | ||| || ||||| ||||| ||||| ||||| || | || ||||| ||
Sbjct 113473 GCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTC 113532
Query 54111 AAAAAATTTCCACGTCAATAGGAATTCGCGCACGGAATCCACAAACACTTTGCGTTTGGA 54170
||| || ||||| || |||||||| || || | || || || | || || |
Sbjct 113533 AAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGC 113592
Query 54171 AGAATCGTG---GAAATGGTAAAACGGATCCGATAACGTCCAACCGCCGATTGACGGTAA 54227
||| | ||||| | ||||| || || |||||||| || ||||| || || |
Sbjct 113593 CTTATCCTTCATGAAATAG---AACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGAC 113649
Query 54228 TACTTTGACGTTGGGATTCGCTTTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATA 54287
| ||| | ||| |||| |||||||||| ||||| | ||| |||||||| ||||||||
Sbjct 113650 AATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATA 113709
Query 54288 CGGTTCGTTCCAGGCGGAGACGCCTTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATG 54347
||| | | | |||||||| || || | |||||||| ||||| ||||| ||
Sbjct 113710 AGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTG 113769
Query 54348 GATGGCTACTTTAAAATCCGACCGGCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCC 54407
|| || |||||||||||| || || || || | | ||| | || | |||||||||
Sbjct 113770 TATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCC 113829
Query 54408 CGGTATAGTTTTTAAACTGTCATTTATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTA 54467
| || ||||||||||||| || || ||||| ||||||||||| ||| || |||||
Sbjct 113830 CTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTA 113889
Query 54468 CAAAAGATGCGTCAAATTAGGCACGGGCACTTTGTCCATTGGAAAAT-TTCGTCCGTACA 54526
||| | ||| |||| || || | || | ||| |||| ||| ||| || || ||||
Sbjct 113890 CAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCA-CGGAGAATCCGCGACCATACA 113948
Query 54527 CTCCCCATTCTACAAAATAGGCGGCCACAACTTTGC 54562
| ||||| || |||||||| ||| | || || ||||
Sbjct 113949 CGCCCCACTCAACAAAATATGCGCCAACGACCTTGC 113984
>seq8056
Length=34938
Score = 159 bits (176), Expect = 3e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || |||||| ||||||| ||| | || || | || || || || ||
Sbjct 31902 CATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTC 31961
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| |||| || | || || |||||||||||||||||||| || || || |||||
Sbjct 31962 AGATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCA 32021
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| ||| | || | ||| || |||||||| ||||| || ||| |||||||||||||
Sbjct 32022 ACAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAA 32081
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||||||| | |||||||| | ||| | || || |||||
Sbjct 32082 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGGCAT 32132
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || | || |||||| | || || || || || ||||| ||
Sbjct 32130 CATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTC 32189
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|| | ||||| | ||||| ||||||||||| || |||||||| || || |||||
Sbjct 32190 AGATACTATTGAAAACGTCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCA 32249
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | || || | ||| ||||| || ||||||| | ||| | ||||| |||||
Sbjct 32250 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAA 32309
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| || || || ||| | ||| | || |||||| | || || || ||
Sbjct 32310 CATTCAGAAAGAATCTACCCTTCATCTTGTATTGCGTCTCCGAGGAGGTAT 32360
>seq48539
Length=7100
Score = 156 bits (172), Expect = 4e-33
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || ||||| |||| |||||| | || ||| | || ||||| || ||
Sbjct 6258 CATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTC 6317
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| ||||||| | || || ||||||||||||||||||||| || || || |||||
Sbjct 6318 CGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCA 6377
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| | | || | ||| ||||| || ||||||||| | ||| | |||||||||||
Sbjct 6378 GCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAA 6437
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || ||| | || ||||| | ||| | || || |||||
Sbjct 6438 TATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGGCAT 6488
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || || ||||| | || || | ||||| ||||| ||
Sbjct 6715 ATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTCA 6774
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || || ||||||||||| ||||| || || || |||||
Sbjct 6775 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAG 6834
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || || || ||||||||||| | ||| |||| || ||||||
Sbjct 6835 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAAC 6894
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||||||||| ||| | || ||||| | ||| |||| ||||| ||
Sbjct 6895 ATTCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 6944
>seq8521
Length=40141
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| |||||||| ||| | || || || || || || || ||
Sbjct 2703 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACCATCACCCTAGAGGTTGAGCCCTCA 2762
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||||| || ||| || || || || || ||||| || || || |||||
Sbjct 2763 GACACAATTGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 2822
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | || || || ||||||||||| | ||| ||||||| ||||||
Sbjct 2823 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCCGACTACAAC 2882
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||| ||||||||| | || ||||| | ||| |||| ||||| ||
Sbjct 2883 ATCCAAAAAGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 2932
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| ||||||||||| | ||||| || || || ||||| ||
Sbjct 2247 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACACTGGAGGTTGAACCCTCG 2306
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| ||||| ||||| || ||||| ||||| || || || |||||
Sbjct 2307 GACAGTATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCCCCAGATCAG 2366
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | ||||| || || | ||||| | || | ||||| ||||||
Sbjct 2367 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 2426
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || | ||| | || | ||| |||| ||||| ||
Sbjct 2427 ATCCAGAAGGAGTCCACACTCCATCTTGTCCTACGTCTGCGTGGTGGTAT 2476
>seq15643
Length=27379
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || || | || || ||||| || || || ||
Sbjct 12047 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCCTCT 12106
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| || || |||||||||||||| || || || |||||
Sbjct 12107 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCTCCAGATCAG 12166
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | || || | |||||| ||||| | || || | ||| |||| ||||||||
Sbjct 12167 CAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTACAAT 12226
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || |||||||| ||
Sbjct 12227 ATCCAGAAGGAGTCCAC 12243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434544185335680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |