Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq223 221 1e-52 seq8056 159 3e-34 seq48539 156 4e-33 seq8521 145 7e-30 seq15643 104 2e-17 >seq223 Length=511576 Score = 221 bits (244), Expect = 1e-52 Identities = 361/516 (70%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 54051 GCCCACGGACGGATTGGCACCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATC 54110 ||||| | ||| || ||||| ||||| ||||| ||||| || | || ||||| || Sbjct 113473 GCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTC 113532 Query 54111 AAAAAATTTCCACGTCAATAGGAATTCGCGCACGGAATCCACAAACACTTTGCGTTTGGA 54170 ||| || ||||| || |||||||| || || | || || || | || || | Sbjct 113533 AAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGC 113592 Query 54171 AGAATCGTG---GAAATGGTAAAACGGATCCGATAACGTCCAACCGCCGATTGACGGTAA 54227 ||| | ||||| | ||||| || || |||||||| || ||||| || || | Sbjct 113593 CTTATCCTTCATGAAATAG---AACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGAC 113649 Query 54228 TACTTTGACGTTGGGATTCGCTTTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATA 54287 | ||| | ||| |||| |||||||||| ||||| | ||| |||||||| |||||||| Sbjct 113650 AATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATA 113709 Query 54288 CGGTTCGTTCCAGGCGGAGACGCCTTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATG 54347 ||| | | | |||||||| || || | |||||||| ||||| ||||| || Sbjct 113710 AGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTG 113769 Query 54348 GATGGCTACTTTAAAATCCGACCGGCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCC 54407 || || |||||||||||| || || || || | | ||| | || | ||||||||| Sbjct 113770 TATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCC 113829 Query 54408 CGGTATAGTTTTTAAACTGTCATTTATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTA 54467 | || ||||||||||||| || || ||||| ||||||||||| ||| || ||||| Sbjct 113830 CTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTA 113889 Query 54468 CAAAAGATGCGTCAAATTAGGCACGGGCACTTTGTCCATTGGAAAAT-TTCGTCCGTACA 54526 ||| | ||| |||| || || | || | ||| |||| ||| ||| || || |||| Sbjct 113890 CAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCA-CGGAGAATCCGCGACCATACA 113948 Query 54527 CTCCCCATTCTACAAAATAGGCGGCCACAACTTTGC 54562 | ||||| || |||||||| ||| | || || |||| Sbjct 113949 CGCCCCACTCAACAAAATATGCGCCAACGACCTTGC 113984 >seq8056 Length=34938 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| ||||||| ||| | || || | || || || || || Sbjct 31902 CATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTC 31961 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| || | || || |||||||||||||||||||| || || || ||||| Sbjct 31962 AGATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCA 32021 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | ||| || |||||||| ||||| || ||| ||||||||||||| Sbjct 32022 ACAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAA 32081 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | |||||||| | ||| | || || ||||| Sbjct 32082 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGGCAT 32132 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || | || |||||| | || || || || || ||||| || Sbjct 32130 CATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTC 32189 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | ||||| ||||||||||| || |||||||| || || ||||| Sbjct 32190 AGATACTATTGAAAACGTCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCA 32249 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || ||||||| | ||| | ||||| ||||| Sbjct 32250 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAA 32309 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || ||| | ||| | || |||||| | || || || || Sbjct 32310 CATTCAGAAAGAATCTACCCTTCATCTTGTATTGCGTCTCCGAGGAGGTAT 32360 >seq48539 Length=7100 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| |||| |||||| | || ||| | || ||||| || || Sbjct 6258 CATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTC 6317 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||| | || || ||||||||||||||||||||| || || || ||||| Sbjct 6318 CGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCA 6377 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| ||||| || ||||||||| | ||| | ||||||||||| Sbjct 6378 GCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAA 6437 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || ||| | || ||||| | ||| | || || ||||| Sbjct 6438 TATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGGCAT 6488 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || ||||| | || || | ||||| ||||| || Sbjct 6715 ATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTCA 6774 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || ||||||||||| ||||| || || || ||||| Sbjct 6775 GATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCAG 6834 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || ||||||||||| | ||| |||| || |||||| Sbjct 6835 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAAC 6894 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 6895 ATTCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 6944 >seq8521 Length=40141 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||||||| ||| | || || || || || || || || Sbjct 2703 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACCATCACCCTAGAGGTTGAGCCCTCA 2762 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || || || ||||| || || || ||||| Sbjct 2763 GACACAATTGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 2822 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || ||||||||||| | ||| ||||||| |||||| Sbjct 2823 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCCGACTACAAC 2882 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||||||| | || ||||| | ||| |||| ||||| || Sbjct 2883 ATCCAAAAAGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 2932 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| ||||||||||| | ||||| || || || ||||| || Sbjct 2247 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACACTGGAGGTTGAACCCTCG 2306 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 2307 GACAGTATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCCCCAGATCAG 2366 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || || | ||||| | || | ||||| |||||| Sbjct 2367 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 2426 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | || | ||| |||| ||||| || Sbjct 2427 ATCCAGAAGGAGTCCACACTCCATCTTGTCCTACGTCTGCGTGGTGGTAT 2476 >seq15643 Length=27379 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || | || || ||||| || || || || Sbjct 12047 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCCTCT 12106 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || || |||||||||||||| || || || ||||| Sbjct 12107 GACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCTCCAGATCAG 12166 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||| ||||| | || || | ||| |||| |||||||| Sbjct 12167 CAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTACAAT 12226 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 12227 ATCCAGAAGGAGTCCAC 12243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434544185335680