Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq12544 226 1e-54 seq785 114 5e-21 seq19589 111 7e-20 >seq12544 Length=38044 Score = 226 bits (250), Expect = 1e-54 Identities = 448/654 (69%), Gaps = 8/654 (1%) Strand=Plus/Minus Query 65177 GTAGGTAGTGCGAAGGGCCAGATGAAATCGCTCCAGTGCA--GCGTACCGTTAAACACCA 65234 || || || ||||| |||||||| || ||| |||| | | |||| ||| || ||||| Sbjct 2454 GTCGGCAGCGCGAATGGCCAGATAAATTCGTACCAGGGAATGGCGT-CCGAGAA-CACCA 2397 Query 65235 GATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAGCC 65294 |||| || | ||| || || ||||| |||||||| || ||| || | || | | Sbjct 2396 GATACAGCACTTCTACCGATCCGACCACGATGTGCGTCAGGTCGCCAATTGCCACCATGT 2337 Query 65295 AGGTCATCAATATAATCACC-ACAATCTTTGCCGCACCCGCTGCAGGAAACATCCATACC 65353 ||||||||| ||||||||| | ||| || || | || || | || | |||||| ||| Sbjct 2336 AGGTCATCAGCATAATCACCCATAAT-TTGGCAGTGCCTGCGGACGGGATCATCCAGACC 2278 Query 65354 ATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCTGGGGGTGTTC 65413 || ||||| |||||||||||||| | || || | | ||||| | || ||||| || Sbjct 2277 ATGGTGGCAATCAGCCAGCCGGACACCATGCCGCCGACGAACATGCC-CTCGGGGTCTTT 2219 Query 65414 TTC-ATCACATCCATGCCGATTTTGACAAATGCATCGCGAGTTTCTTCATTGAAGATTGG 65472 ||| || | |||| | ||| || ||| || ||| || | || ||||| || Sbjct 2218 TTCCATAATCTCCAGACTGATGGTGCGAAAAGCCTCGTCCGTGGCGGAATCGAAGAACGG 2159 Query 65473 CATATATTCAAATGCCCACGCCGCAATACCTGTCCCGAGAATATTACCCAGCAGCACGAC 65532 || | ||| || || || | || |||| | ||||| |||||||| Sbjct 2158 CACCAGATGAAACACCAGTGCGGCCAGTCCGCCGCCGATGACGTTACCGGCCAGCACGAT 2099 Query 65533 GCCCCATAACCGCATAAGTAAGCCAACGTTGCTCATTGTCGGTTTTTGCATGACGGGTAG 65592 |||||| ||||||| || | || ||| | |||| ||||||||||||||| | Sbjct 2098 GCCCCACAACCGCAACAGCAGCAGAATGTTTTTGCCCGTCGTTTTTTGCATGACGGGCAA 2039 Query 65593 TACCGCAGTCACGGTGTTTTCGGTAAATAATTGCTGGCGGGCCATAATGACGATAATAAA 65652 ||| || || || ||||| ||||||||||| |||||||| ||||| ||||| || || || Sbjct 2038 TACGGCGGTGACCGTGTTCTCGGTAAATAACTGCTGGCGCGCCATGATGACAATTATGAA 1979 Query 65653 ACCAAAGGTATAACCGAGATTCTCCAGCAAGAAGCTGCCCGGCACACCTTCCAGTTCGAC 65712 || | ||||||||||| ||| || | ||||| | | || | ||| | | Sbjct 1978 CCCGACGGTATAACCGATATTTTCGATAAAGAAACGTTCGGGGCTGTCGGGCAGGCGGGC 1919 Query 65713 ATGAAATATCCCTTTTGCCAGTAATGAAGCGCCCATCGACAGACCCGCCGCAATGGCTGA 65772 |||| || ||||| |||| | || |||| || || || || || ||||| || || Sbjct 1918 GTGAAGAATGCCTTTAGCCATCAGCGAGGCGCTGATGGAAAGCCCGGCAGCAATCGCCGA 1859 Query 65773 CCACAGTAGTGCCATTGCGTCGCGTTCCAGCTCTTTTTCACCATCCTGGCGGAT 65826 |||||| | |||| | ||||||| || || ||||| ||||| ||| |||||| Sbjct 1858 CCACAGCAATGCCTGTCCGTCGCGCTCAAGTTCTTTCTCACCCTCCATGCGGAT 1805 >seq785 Length=396209 Score = 114 bits (126), Expect = 5e-21 Identities = 89/102 (87%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 27162 TACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATA 27219 |||||| || |||| || || ||||||||||||||||| ||| ||||| |||||||||| Sbjct 187992 TACCGT-ATAATCCCGCACCTCGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATA 187934 Query 27220 ATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 27261 ||||| |||||||||||||| ||||||||||||||||| || Sbjct 187933 ATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAAT 187892 >seq19589 Length=24186 Score = 111 bits (122), Expect = 7e-20 Identities = 295/449 (66%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 32161 ATCCTCGACCAGTTTCTGGATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGT 32220 ||||||| || ||||| ||||||||||||||||| ||||| || | ||||| Sbjct 19197 ATCCTCGGACAATTTCTTGATGAAAAGGAAGGTAATAGTCTGACGGCTTATCAGGATGGC 19256 Query 32221 GCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCT 32280 | ||| |||||||| || ||||| || | ||||| | ||||| ||||| || | Sbjct 19257 GTGGGGATCTGGACAATTTGCCGCGGCGTTACCCGCATTGATGGGCGCCCTGT--TTACA 19314 Query 32281 --GGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGG 32338 ||||||| || | || || |||| || ||| | ||| |||||| Sbjct 19315 AAGGCATGACATTGACTGCGGCGAAGTGCGCAGATGTGAACAAATTGGAATCCAATAAGG 19374 Query 32339 CGCTGGCATGGGTGGAGCGTAATATAAAAGTTCCACTGACCGAGCCACAAAAAGCAGGTA 32398 || | | ||||| | |||| | | || | ||||| |||| |||| || |||| Sbjct 19375 CGATAGAGTGGGTTAAAACTAATGTCACTGTCACGCTGACTCAGCCGCAAATTGCCGGTA 19434 Query 32399 TCGCGTCATTTTGCCCCTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATA 32458 |||| |||||||||||||| |||||||| || | || || ||| | || ||||| || | Sbjct 19435 TCGCATCATTTTGCCCCTACAACATTGGACCGGCGAAATGCTTCACTTCAACGTTCTACA 19494 Query 32459 AGCGGCTTAATGCAGGCGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGG 32518 | || ||||| || ||| | || || |||| | || ||||| | | Sbjct 19495 AAAAACTAAATGCCGGAGATAAACGTGGTGCCTGTGCTGAAATAAAGCGGTGGGTACGCG 19554 Query 32519 ACGGTGGCAGAGACTGCCGTATCCGTTCAAACAACTGTTACGGTCAGGTATCAAGACGTG 32578 | | ||| | ||||||| | ||| ||| || || | || ||||| | | |||| Sbjct 19555 ATGATGGGAAAGACTGCAATGCCCGGGAAAATAATTGCTTTGGGCAGGTGATACGCCGTG 19614 Query 32579 ACCAGGAGAGTGCGCTGGCATGCTGGGGT 32607 | ||||| || | || ||||||||||| Sbjct 19615 ATCAGGAAAGCGAACTAACATGCTGGGGT 19643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210754246784184