Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_028656.1
Length=65955
Score E
Sequences producing significant alignments: (Bits) Value
seq12544 226 1e-54
seq785 114 5e-21
seq19589 111 7e-20
>seq12544
Length=38044
Score = 226 bits (250), Expect = 1e-54
Identities = 448/654 (69%), Gaps = 8/654 (1%)
Strand=Plus/Minus
Query 65177 GTAGGTAGTGCGAAGGGCCAGATGAAATCGCTCCAGTGCA--GCGTACCGTTAAACACCA 65234
|| || || ||||| |||||||| || ||| |||| | | |||| ||| || |||||
Sbjct 2454 GTCGGCAGCGCGAATGGCCAGATAAATTCGTACCAGGGAATGGCGT-CCGAGAA-CACCA 2397
Query 65235 GATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCAGGGCAATAAGCC 65294
|||| || | ||| || || ||||| |||||||| || ||| || | || | |
Sbjct 2396 GATACAGCACTTCTACCGATCCGACCACGATGTGCGTCAGGTCGCCAATTGCCACCATGT 2337
Query 65295 AGGTCATCAATATAATCACC-ACAATCTTTGCCGCACCCGCTGCAGGAAACATCCATACC 65353
||||||||| ||||||||| | ||| || || | || || | || | |||||| |||
Sbjct 2336 AGGTCATCAGCATAATCACCCATAAT-TTGGCAGTGCCTGCGGACGGGATCATCCAGACC 2278
Query 65354 ATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCGCTGGGGGTGTTC 65413
|| ||||| |||||||||||||| | || || | | ||||| | || ||||| ||
Sbjct 2277 ATGGTGGCAATCAGCCAGCCGGACACCATGCCGCCGACGAACATGCC-CTCGGGGTCTTT 2219
Query 65414 TTC-ATCACATCCATGCCGATTTTGACAAATGCATCGCGAGTTTCTTCATTGAAGATTGG 65472
||| || | |||| | ||| || ||| || ||| || | || ||||| ||
Sbjct 2218 TTCCATAATCTCCAGACTGATGGTGCGAAAAGCCTCGTCCGTGGCGGAATCGAAGAACGG 2159
Query 65473 CATATATTCAAATGCCCACGCCGCAATACCTGTCCCGAGAATATTACCCAGCAGCACGAC 65532
|| | ||| || || || | || |||| | ||||| ||||||||
Sbjct 2158 CACCAGATGAAACACCAGTGCGGCCAGTCCGCCGCCGATGACGTTACCGGCCAGCACGAT 2099
Query 65533 GCCCCATAACCGCATAAGTAAGCCAACGTTGCTCATTGTCGGTTTTTGCATGACGGGTAG 65592
|||||| ||||||| || | || ||| | |||| ||||||||||||||| |
Sbjct 2098 GCCCCACAACCGCAACAGCAGCAGAATGTTTTTGCCCGTCGTTTTTTGCATGACGGGCAA 2039
Query 65593 TACCGCAGTCACGGTGTTTTCGGTAAATAATTGCTGGCGGGCCATAATGACGATAATAAA 65652
||| || || || ||||| ||||||||||| |||||||| ||||| ||||| || || ||
Sbjct 2038 TACGGCGGTGACCGTGTTCTCGGTAAATAACTGCTGGCGCGCCATGATGACAATTATGAA 1979
Query 65653 ACCAAAGGTATAACCGAGATTCTCCAGCAAGAAGCTGCCCGGCACACCTTCCAGTTCGAC 65712
|| | ||||||||||| ||| || | ||||| | | || | ||| | |
Sbjct 1978 CCCGACGGTATAACCGATATTTTCGATAAAGAAACGTTCGGGGCTGTCGGGCAGGCGGGC 1919
Query 65713 ATGAAATATCCCTTTTGCCAGTAATGAAGCGCCCATCGACAGACCCGCCGCAATGGCTGA 65772
|||| || ||||| |||| | || |||| || || || || || ||||| || ||
Sbjct 1918 GTGAAGAATGCCTTTAGCCATCAGCGAGGCGCTGATGGAAAGCCCGGCAGCAATCGCCGA 1859
Query 65773 CCACAGTAGTGCCATTGCGTCGCGTTCCAGCTCTTTTTCACCATCCTGGCGGAT 65826
|||||| | |||| | ||||||| || || ||||| ||||| ||| ||||||
Sbjct 1858 CCACAGCAATGCCTGTCCGTCGCGCTCAAGTTCTTTCTCACCCTCCATGCGGAT 1805
>seq785
Length=396209
Score = 114 bits (126), Expect = 5e-21
Identities = 89/102 (87%), Gaps = 3/102 (3%)
Strand=Plus/Minus
Query 27162 TACCGTTATTATCCTGCGCC-CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATA 27219
|||||| || |||| || || ||||||||||||||||| ||| ||||| ||||||||||
Sbjct 187992 TACCGT-ATAATCCCGCACCTCGGCCCTTTAGCTCAGTTGGTTAGAGCACGCGACTCATA 187934
Query 27220 ATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 27261
||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 187933 ATCGCTTGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCAAAT 187892
>seq19589
Length=24186
Score = 111 bits (122), Expect = 7e-20
Identities = 295/449 (66%), Gaps = 4/449 (1%)
Strand=Plus/Plus
Query 32161 ATCCTCGACCAGTTTCTGGATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGT 32220
||||||| || ||||| ||||||||||||||||| ||||| || | |||||
Sbjct 19197 ATCCTCGGACAATTTCTTGATGAAAAGGAAGGTAATAGTCTGACGGCTTATCAGGATGGC 19256
Query 32221 GCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCT 32280
| ||| |||||||| || ||||| || | ||||| | ||||| ||||| || |
Sbjct 19257 GTGGGGATCTGGACAATTTGCCGCGGCGTTACCCGCATTGATGGGCGCCCTGT--TTACA 19314
Query 32281 --GGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGG 32338
||||||| || | || || |||| || ||| | ||| ||||||
Sbjct 19315 AAGGCATGACATTGACTGCGGCGAAGTGCGCAGATGTGAACAAATTGGAATCCAATAAGG 19374
Query 32339 CGCTGGCATGGGTGGAGCGTAATATAAAAGTTCCACTGACCGAGCCACAAAAAGCAGGTA 32398
|| | | ||||| | |||| | | || | ||||| |||| |||| || ||||
Sbjct 19375 CGATAGAGTGGGTTAAAACTAATGTCACTGTCACGCTGACTCAGCCGCAAATTGCCGGTA 19434
Query 32399 TCGCGTCATTTTGCCCCTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATA 32458
|||| |||||||||||||| |||||||| || | || || ||| | || ||||| || |
Sbjct 19435 TCGCATCATTTTGCCCCTACAACATTGGACCGGCGAAATGCTTCACTTCAACGTTCTACA 19494
Query 32459 AGCGGCTTAATGCAGGCGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGG 32518
| || ||||| || ||| | || || |||| | || ||||| | |
Sbjct 19495 AAAAACTAAATGCCGGAGATAAACGTGGTGCCTGTGCTGAAATAAAGCGGTGGGTACGCG 19554
Query 32519 ACGGTGGCAGAGACTGCCGTATCCGTTCAAACAACTGTTACGGTCAGGTATCAAGACGTG 32578
| | ||| | ||||||| | ||| ||| || || | || ||||| | | ||||
Sbjct 19555 ATGATGGGAAAGACTGCAATGCCCGGGAAAATAATTGCTTTGGGCAGGTGATACGCCGTG 19614
Query 32579 ACCAGGAGAGTGCGCTGGCATGCTGGGGT 32607
| ||||| || | || |||||||||||
Sbjct 19615 ATCAGGAAAGCGAACTAACATGCTGGGGT 19643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 210754246784184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |