Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_028657.1
Length=60919
Score E
Sequences producing significant alignments: (Bits) Value
seq223 165 3e-36
seq25848 131 7e-26
seq725 86.0 2e-12
>seq223
Length=511576
Score = 165 bits (182), Expect = 3e-36
Identities = 237/334 (71%), Gaps = 0/334 (0%)
Strand=Plus/Minus
Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335
||||| || |||||||| ||||| || ||||| | || ||||||||| |||||||
Sbjct 459878 AGAGGCGTAAACAAAGTTATTCTCGTCGGTAATCTGGGACAAGACCCGGAAGTCCGCTAC 459819
Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395
||||| |||||| ||||| |||||||||| || || || ||||||||| |||
Sbjct 459818 ATGCCTAACGGCGGCGCGGTTGCCAACATCACTCTGGCAACGTCTGAGAGCTGGCGTGAC 459759
Query 7396 AAGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGC 7455
|| |||||| |||| | ||| | || | ||||| |||||||| |||||
Sbjct 459758 AAAGCCACCGGCGAGCAGAAAGAAAAAACGGAATGGCACCGTGTGGTGTTGTTCGGCAAA 459699
Query 7456 CTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGC 7515
| || || |||| ||||| |||||| || ||||| ||||||||| ||||||||
Sbjct 459698 TTAGCAGAAGTCGCAGGCGAATACCTGAAGAAAGGTTCTCAGGTCTACATCGAAGGCGCA 459639
Query 7516 CTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATC 7575
|||| ||||| || ||| | ||||| ||| || |||||||||||| || ||
Sbjct 459638 CTGCAAACCCGTAAATGGACCGATCAGGCTGGCGTTGAAAAATACACCACCGAAGTCGTC 459579
Query 7576 GTCGACATGCACGGACAGATGCAGATGCTTGGCG 7609
|| || || ||| ||||||||||| ||||
Sbjct 459578 GTTAACGTGGGCGGCACCATGCAGATGCTCGGCG 459545
>seq25848
Length=116905
Score = 131 bits (144), Expect = 7e-26
Identities = 227/329 (69%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 7283 TTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCA 7342
||||||||||||| | || ||||| | ||| | ||||| ||||||||||| |
Sbjct 107996 TTAACAAAGTCATCATCGTGGGTAATTTAGGTCAGGCACCGGAGCTGCGCTACATGCCGA 108055
Query 7343 ACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGA 7402
||||| |||||| | | | | || || ||||| ||| | |||| ||||| |
Sbjct 108056 ACGGCGGCGCGGTGGCGAGCCTGACGCTGGCCACGTCCGAAAACTGGCGTGACAAAGCCA 108115
Query 7403 CCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGG 7462
||||| |||| | ||| |||||| ||||||||||| | ||||| ||||| |
Sbjct 108116 CCGGCGAGCAGCGCGAAAAAACCGAGTGGCACCGCGTGGTCGTGTTCGGAAAGCTGGCCG 108175
Query 7463 AGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCA 7522
| || ||||| || |||||| |||||| | | |||||| |||||||| |||| |
Sbjct 108176 AAATTGCCGGTGAATACCTGACCAAGGGCGCAAAAGTCTACATCGAAGGCCAGCTGCAGA 108235
Query 7523 CCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTCGACA 7582
||||||| ||||||| | | | || ||||| |||||||| || ||| | | ||
Sbjct 108236 CCCGCAAATGGCAGGATGCGCAGGGTATCGACCGTTACACCAC---GGAAATTGCGGTCA 108292
Query 7583 TG---CACGGACAGATGCAGATGCTTGGC 7608
| |||| |||||||||||| |||
Sbjct 108293 AGGCAAACGGCACGATGCAGATGCTGGGC 108321
>seq725
Length=236385
Score = 86.0 bits (94), Expect = 2e-12
Identities = 173/252 (69%), Gaps = 10/252 (4%)
Strand=Plus/Minus
Query 29405 CCAGCAGTCC-TGCACCCCATGCACGAACGCGCGCCCGAGCAGCGGCACCTGATCGACGG 29463
|||||||||| | |||| ||||||| | ||| |||| | ||||| | || |
Sbjct 212203 CCAGCAGTCCGTATGGCCCA-GCACGAATGGTCGCTCGAGTAACGGCAGTTCCCCGCGCG 212145
Query 29464 GCTCGATGGTACGCAGGTCGCCCTCCGGCCAGCTCAGGATGTGCCAAGTCAGGCCCGAGG 29523
|| ||||||||| | || |||||||||||||| | ||||||||| | || ||| ||
Sbjct 212144 GCAGGATGGTACGTAAATCCCCCTCCGGCCAGCTGACGATGTGCCAGGGCAATTCCGTGG 212085
Query 29524 CGTTGCACATCGCGACATCTGCGGCACTCGGTCGGCTG----GTGGCATCGGGGTGGCTA 29579
||| ||||| | | | | | | | |||| ||||||| || || || ||||||||
Sbjct 212084 CGT--CACATTGAGCCTTGTCCAG--CTCGCTCGGCTGCGTCGTTGCGTCTGGGTGGCTG 212029
Query 29580 TGCACCACGGCGACGATCTCTCCCTGGTCCTCTGCCTCTGCATACGCCTCCGGCGCGATG 29639
|| || || || | | | |||| |||||| || | ||||| ||| ||| |||
Sbjct 212028 TGGACTACTGCTATCACCGTTCCCCAGTCCTCCGCGCCAGCATAGCCCTGCGGATCGAGA 211969
Query 29640 CGGAACTCCTCG 29651
|||| | ||||
Sbjct 211968 TGGAAATGCTCG 211957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194659954055348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |