Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq223 165 3e-36 seq25848 131 7e-26 seq725 86.0 2e-12 >seq223 Length=511576 Score = 165 bits (182), Expect = 3e-36 Identities = 237/334 (71%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 ||||| || |||||||| ||||| || ||||| | || ||||||||| ||||||| Sbjct 459878 AGAGGCGTAAACAAAGTTATTCTCGTCGGTAATCTGGGACAAGACCCGGAAGTCCGCTAC 459819 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 ||||| |||||| ||||| |||||||||| || || || ||||||||| ||| Sbjct 459818 ATGCCTAACGGCGGCGCGGTTGCCAACATCACTCTGGCAACGTCTGAGAGCTGGCGTGAC 459759 Query 7396 AAGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGC 7455 || |||||| |||| | ||| | || | ||||| |||||||| ||||| Sbjct 459758 AAAGCCACCGGCGAGCAGAAAGAAAAAACGGAATGGCACCGTGTGGTGTTGTTCGGCAAA 459699 Query 7456 CTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGC 7515 | || || |||| ||||| |||||| || ||||| ||||||||| |||||||| Sbjct 459698 TTAGCAGAAGTCGCAGGCGAATACCTGAAGAAAGGTTCTCAGGTCTACATCGAAGGCGCA 459639 Query 7516 CTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATC 7575 |||| ||||| || ||| | ||||| ||| || |||||||||||| || || Sbjct 459638 CTGCAAACCCGTAAATGGACCGATCAGGCTGGCGTTGAAAAATACACCACCGAAGTCGTC 459579 Query 7576 GTCGACATGCACGGACAGATGCAGATGCTTGGCG 7609 || || || ||| ||||||||||| |||| Sbjct 459578 GTTAACGTGGGCGGCACCATGCAGATGCTCGGCG 459545 >seq25848 Length=116905 Score = 131 bits (144), Expect = 7e-26 Identities = 227/329 (69%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 7283 TTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCA 7342 ||||||||||||| | || ||||| | ||| | ||||| ||||||||||| | Sbjct 107996 TTAACAAAGTCATCATCGTGGGTAATTTAGGTCAGGCACCGGAGCTGCGCTACATGCCGA 108055 Query 7343 ACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGA 7402 ||||| |||||| | | | | || || ||||| ||| | |||| ||||| | Sbjct 108056 ACGGCGGCGCGGTGGCGAGCCTGACGCTGGCCACGTCCGAAAACTGGCGTGACAAAGCCA 108115 Query 7403 CCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGG 7462 ||||| |||| | ||| |||||| ||||||||||| | ||||| ||||| | Sbjct 108116 CCGGCGAGCAGCGCGAAAAAACCGAGTGGCACCGCGTGGTCGTGTTCGGAAAGCTGGCCG 108175 Query 7463 AGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCA 7522 | || ||||| || |||||| |||||| | | |||||| |||||||| |||| | Sbjct 108176 AAATTGCCGGTGAATACCTGACCAAGGGCGCAAAAGTCTACATCGAAGGCCAGCTGCAGA 108235 Query 7523 CCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTCGACA 7582 ||||||| ||||||| | | | || ||||| |||||||| || ||| | | || Sbjct 108236 CCCGCAAATGGCAGGATGCGCAGGGTATCGACCGTTACACCAC---GGAAATTGCGGTCA 108292 Query 7583 TG---CACGGACAGATGCAGATGCTTGGC 7608 | |||| |||||||||||| ||| Sbjct 108293 AGGCAAACGGCACGATGCAGATGCTGGGC 108321 >seq725 Length=236385 Score = 86.0 bits (94), Expect = 2e-12 Identities = 173/252 (69%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 29405 CCAGCAGTCC-TGCACCCCATGCACGAACGCGCGCCCGAGCAGCGGCACCTGATCGACGG 29463 |||||||||| | |||| ||||||| | ||| |||| | ||||| | || | Sbjct 212203 CCAGCAGTCCGTATGGCCCA-GCACGAATGGTCGCTCGAGTAACGGCAGTTCCCCGCGCG 212145 Query 29464 GCTCGATGGTACGCAGGTCGCCCTCCGGCCAGCTCAGGATGTGCCAAGTCAGGCCCGAGG 29523 || ||||||||| | || |||||||||||||| | ||||||||| | || ||| || Sbjct 212144 GCAGGATGGTACGTAAATCCCCCTCCGGCCAGCTGACGATGTGCCAGGGCAATTCCGTGG 212085 Query 29524 CGTTGCACATCGCGACATCTGCGGCACTCGGTCGGCTG----GTGGCATCGGGGTGGCTA 29579 ||| ||||| | | | | | | | |||| ||||||| || || || |||||||| Sbjct 212084 CGT--CACATTGAGCCTTGTCCAG--CTCGCTCGGCTGCGTCGTTGCGTCTGGGTGGCTG 212029 Query 29580 TGCACCACGGCGACGATCTCTCCCTGGTCCTCTGCCTCTGCATACGCCTCCGGCGCGATG 29639 || || || || | | | |||| |||||| || | ||||| ||| ||| ||| Sbjct 212028 TGGACTACTGCTATCACCGTTCCCCAGTCCTCCGCGCCAGCATAGCCCTGCGGATCGAGA 211969 Query 29640 CGGAACTCCTCG 29651 |||| | |||| Sbjct 211968 TGGAAATGCTCG 211957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194659954055348