Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq725 136 2e-27 seq785 114 5e-21 >seq725 Length=236385 Score = 136 bits (150), Expect = 2e-27 Identities = 336/502 (67%), Gaps = 22/502 (4%) Strand=Plus/Minus Query 4863 CCCCAGCATGCCAGCGCACTCTCCTGGTCGCGACGGGATACCTGACCGTAGCAATTATTT 4922 |||||||| | |||| | || ||||| ||||| || ||||| || |||||||||| Sbjct 193473 CCCCAGCACGTCAGCTCGCTTTCCTGATCGCGGCGTATCACCTGCCCAAGGCAATTATTT 193414 Query 4923 GAGCGGATACGGCAGTCTCTGCCACCGTCCTTAATCCACCAGCG-----AATCGCTTCAC 4977 | |||| | ||||||| | |||||||| | | |||||| ||||| ||| Sbjct 193413 GCCCGGACATTGCAGTCTTTACCACCGTC---ACGCACCCAGCGCTTTATCTCGCTGCAC 193357 Query 4978 ACGCTCCCCTGCGATCGCCTGCATTAA---TTCGTTTATAAAACGTCGACGGGAAACACT 5034 ||| | || |||||| || || | |||| || || || || | ||||| | Sbjct 193356 GCGCCGCGCT--TATCGCCAGCGTTGAGCTTTCG---GTAGAAAGTGGATGAAAAACATT 193302 Query 5035 TACCGGGGCCAATGTTGTAAGGACAGAATGACGCGATCCCCGCTTTCTGAGGTTCGGTCA 5094 | |||||| |||||||| || ||||| || ||||| || || ||||||| | || | Sbjct 193301 TCGAGGGGCCGATGTTGTAGGGGCAGAACGAGGCGATGCCAGCAATCTGAGGCTGCGTAA 193242 Query 5095 GTGGCACTCTGATGTTTTTCGCCACCCATGCCAGCGCCTTATCACGTTCAATGGCG-TTA 5153 |||| || ||| ||||| | |||||| || | |||||| | || | | || || Sbjct 193241 GTGGAACGTTGACGTTTTCCTTCACCCAGGCAATCGCCTTGTTTGACTCCA-GCCGATTC 193183 Query 5154 ACCTGGTCGCATTTTTCCTTCGACAACTTCATGCCGGGGACGACAAGCTTACCATCCACC 5213 ||||| |||| || | | || | |||| || ||| ||||||| || || Sbjct 193182 ACCTGCGCGCACTTCGCAGCGGTCAGCCTCATACCTTTATAGACCGGCTTACCGTCGACA 193123 Query 5214 TGGGTGGCACCACGGCAGATGGTCCAGATACCCACACCATCACGGTATGCCGTGGTGTGG 5273 || | || |||||||| || ||||| | || |||||| | || || || | | Sbjct 193122 CGGATTGCGCCACGGCAAATCGTCCAAAGGCCGGTACCATCTTGATAGGCAGTCAGGCTG 193063 Query 5274 TTGCCTTCCTTTTCATCCAGAAACTGGTCGAGGATTTCAGGCGCAGAAGCACCTGCGGCA 5333 || ||||| || |||||||| || || ||||| || | || ||||| || || | || Sbjct 193062 TTACCTTCTTTCTCATCCAGCAATTGATCGAGAATAGCCGGGGCAGATGCGCCACC--CA 193005 Query 5334 AT--CAGCGCCAGAACGGCAGC 5353 || ||||||||| || || || Sbjct 193004 ATACCAGCGCCAGCACAGCGGC 192983 >seq785 Length=396209 Score = 114 bits (126), Expect = 5e-21 Identities = 89/102 (87%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 10210 ATATGGTGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTC 10269 || ||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 187892 ATTTGGTGGCCCTTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCGTGCTCTA 187951 Query 10270 ACC-ACTGAGCTAAAGGGCCG-GGCGCAGGATAATAACGGTA 10309 ||| ||||||||||||||||| || || |||| || |||||| Sbjct 187952 ACCAACTGAGCTAAAGGGCCGAGGTGCGGGATTAT-ACGGTA 187992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195030850635076