Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq35 140 1e-28 >seq35 Length=455554 Score = 140 bits (154), Expect = 1e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 ||| |||| ||| | |||||||||||| || || || ||||| ||||| || ||||| | Sbjct 158575 GAAATCGACGTCGAAGTCGGGCATGGAAACACGTTCAGGGTTGAGGAAACGTTCGAACAG 158516 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAAC 40292 ||| | ||| || ||||| || ||||| || || ||| || || |||||||||| Sbjct 158515 GAGGTCAAACTCGAGCGGATCCAGATCGGTAATTTTCAGCGCA-TATGCAACCAGCGAAC 158457 Query 40293 CGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40352 |||| | || || ||||| ||||| ||| ||||| ||| ||||| | ||| ||||| Sbjct 158456 CGGCACCGGAACCACGCCCGGGACCTACCGGCACGCTGTTATCCTTCGACCACTGGATGA 158397 Query 40353 AGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGAT 40398 | || |||| ||||||||| |||||| ||||||||| |||| Sbjct 158396 ATTCCATTACGATCAGGAAGTATCCCGGGAATCCCATCTGGTTGAT 158351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160275283207116