Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq785 159 5e-34 >seq785 Length=396209 Score = 159 bits (176), Expect = 5e-34 Identities = 524/806 (65%), Gaps = 24/806 (3%) Strand=Plus/Plus Query 125865 GCTTCAATAGCAATACGCGGGATATTGATTGAGACGACGCCTAAGTTATTACGACCATCG 125924 ||||| | ||||||||||| | ||| | || ||||| | ||||| || || ||| Sbjct 142240 GCTTCCAGCGCAATACGCGGCAGATTCAGGCTGATCACGCCGATATTATTGCGGCCCTCG 142299 Query 125925 AATACCGTTTCACCATCTTCGTTCTTCCAGTCACCCAAGAATGAGCGACAGCCCATTGGA 125984 | | | || |||| ||| ||| | || | |||| ||| ||| |||||||| || Sbjct 142300 TGGATCATCTCGCCATTTTC-TTCATACA--CGCCCAGGAAACTGCGGCAGCCCATCGGC 142356 Query 125985 GACTTAAACCCACCAGTCGTTTCAACTAGTTTGTCATAGTTCAAAATGTCTGGGTACATA 126044 | || ||| ||| || || || | | ||||| || | ||||| ||||||||| Sbjct 142357 GTTTTGAACGAACCTGTGACTTTCACCACCTGATCATAATTGAGGATGTCCGGGTACATA 142416 Query 126045 CGCTTACTTGCACATTCAAGAGCTAACTTTTTGATGCCGTAGCACGGGTCGCCTTCTTTC 126104 ||||| || || ||||| || || | | |||||| ||||| | ||| || |||| Sbjct 142417 CGCTTGCTGGCGCATTCCAGTGCCAGTTGCTTGATGTCGTAGTTGGCGTCACCGGCTTTA 142476 Query 126105 AGATTCACGCCGTCTCTCAATGTGAAAACAAGCTTAGGGAAAATAGCAGTTTTCTTAGTC 126164 |||||| |||||| | | | || || || || ||||| | ||| ||||| | | Sbjct 142477 TGATTCAGGCCGTCACGGATGGCAAACACCAGTTTTGGGAATACAGCGGTTTTGCGATTT 142536 Query 126165 TTACCTAGACCTGCAATACGATTCTGAAGAATACTTTTTTGAATAAGTTTTTCTTCCCAC 126224 || || || || ||||| || || | ||||| || || || || |||||| Sbjct 142537 TTGCCCAGTCCGGCAATGCGGTTACGCAGAATTGATTGCTGGATCAGGCGCGATTCCCAG 142596 Query 126225 GACGTACCTAACCCGAAGTTGATTGTCGTGAATGGTGTCTGACCGTTTGAAGTCTGCATC 126284 || || || | || || || || || || ||||| ||||| | || |||| | Sbjct 142597 GATGTGCCGAGGCCAAAACCGAAGGTGACAAACGGCGTCTGGCCGTTGGCGGTGTGCAGC 142656 Query 126285 GTATTGACTTGATATTCAAACGTCTGGAATGCATCGAACGTTTCCTTTTCAACACGCTTT 126344 ||||| || | |||||| | || |||||| || || | || ||||| ||| | Sbjct 142657 GTATTAACCTCATATTCCAGCGACTGGAAGGCGTCATAACACTCTTTTTCGGTACGGCTG 142716 Query 126345 CGTGCAAAGATAGCAGC-TTTAGAATCAGAGTCGGGATGTTCTTCTCGACCTACTTCGA- 126402 | |||||| | | || | | |||| | | ||| ||| | | | || Sbjct 142717 TGAGCAAAGCCATCCGCATCTGCAATCTGCCAC-------TCT--TCGGC--AGTCTGAC 142765 Query 126403 GCCATTTAT--AATATGAC--TTACGAACATAAGGTGCTAGGACTTCGTCGATTCTATTG 126458 | ||||| || || | | |||||| || || || ||||||||||| | || Sbjct 142766 GATGTTTATTGAAGCTGGCGGTGACGAAC----GGCGCCAGTACTTCGTCGATGCGGTTA 142821 Query 126459 ATCGTGTTACCGCCGTAGATATGGCTACTTACTTGCTGAATAATCTGAGTTACAACAGTG 126518 || || | |||||||| |||||||| || ||| |||||||| | || | Sbjct 142822 ATGGTCGTGCCGCCGTAAATATGGCTGGCGACCTGCGCGATAATCTGCGCGGTGACGGCC 142881 Query 126519 GCAGCAGTGCTAATACTGTTTGGTTCTTCGATTTCAGCATTACCCATTTTGAAGCCGCCT 126578 | || ||| |||| ||||| || ||||| ||||||||||||||||| ||| Sbjct 142882 GTTGCGGTGGAAATAGACTTTGGCGTGTCAATTTCCGCATTACCCATTTTGAAACCGTGA 142941 Query 126579 TCAAACATGCCTTTGATATCAATAAGCATACAGTTGAATTGCGGGAATAATGGACTGTAG 126638 | ||||||||||| | || || ||||| ||||| || |||||| || || || Sbjct 142942 TTCAACATGCCTTTAAGGTCGATCAGCATGCAGTTAAACATCGGGAAGAACGGGGAATAA 143001 Query 126639 TCAAGGTCATGAAAATGAATATCGCC 126664 || ||||||||| |||| || ||||| Sbjct 143002 TCGAGGTCATGATAATGGATTTCGCC 143027 Score = 109 bits (120), Expect = 9e-19 Identities = 222/326 (68%), Gaps = 4/326 (1%) Strand=Plus/Plus Query 125238 TAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATTCGGGAACTCAGCATAA 125297 |||||||| ||| || || |||| | |||| | ||| || ||| | || |||| Sbjct 141616 TAATCCCACACGTCTTCCAGCGCTTTCAGATTGTGTTGCAGGTTAGGGTATTCGCCATAG 141675 Query 125298 CAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGC--TTCAAAATCAATTTTCTCAA 125355 ||||||||||| ||||| || ||| | | | || | || ||| || || | ||| || Sbjct 141676 CAGATGAAACCGCCGTT-GC-TGAGTGGCGGATACGGCGCTTCGAAGTCGAGTTTTTCGT 141733 Query 125356 ATGGGTTCACTTTCTTGAACACGTCTAAGTGAAACGAGTTTGTGTAATAGTCTTTGTCAT 125415 | || || || ||||| ||||| | || || ||| ||||| || |||| ||| Sbjct 141734 ACGGATTTACCTTCTTCTCGACGTCCAGATGGAAGCTGTTGGTGTAGTAACCTTTATCAG 141793 Query 125416 TGATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGAAACGATCACATAGCG 125475 | | ||| | | | ||| ||| ||| || ||||||||||| || || || || Sbjct 141794 TCACACCGGCCACCAGCCCGAATTCGGCTTTATCCAGACGACAGAAGCGGTCGCACAGGT 141853 Query 125476 ATTCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTTCTTTCCATGCATCGG 125535 ||| || || || |||||||| ||||||||||||||||| |||||||| |||| Sbjct 141854 TTTCGCTCGGCGTGCTGTACAGGCTGAAACCGTAGCCCGTTTCGTCTTTCCAGCTTTCGG 141913 Query 125536 TGTACGCTCTAAGAGTTTCCACAATC 125561 | |||| | ||| |||||||| Sbjct 141914 TTGCCGCTTTCAGACGAGCCACAATC 141939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793070634558720