Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq785 165 4e-36 >seq785 Length=396209 Score = 165 bits (182), Expect = 4e-36 Identities = 424/638 (66%), Gaps = 21/638 (3%) Strand=Plus/Plus Query 66473 ACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66532 ||||||||| | ||||||| ||| | || ||| || | || | |||||| | Sbjct 355069 ACCGGCTCTTTGTCTCTGGATATCGCGTTAGGTGCCGGTGGTTTACCAATGGGCCGTATC 355128 Query 66533 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66592 || ||||| ||||| ||||||||||| || || | || ||| | | || | | || Sbjct 355129 GTTGAAATTTACGGACCAGAATCTTCCGGTAAAACCACGCTGACTTTGCAAGTTATCGCA 355188 Query 66593 AATGCGCAGAAGGCCGGTGGCAACGCC---GCCTACATCGACGCTGAGCACTCCCTGGAC 66649 || ||| || ||||| || || | |||||| || |||||| | |||||| Sbjct 355189 GCAGCACAGCG---CGAAGGCAAAACCTGTGCGTTCATCGATGCAGAGCACGCACTGGAC 355245 Query 66650 CCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT-TCAGCCCGA 66708 || ||||| || || || || || |||| ||||| || || | |||||| || Sbjct 355246 CCGATCTACGCTAAAAAACTGGGCGTAGATATCGATAACCTGCTG-TGTTCTCAGCCAGA 355304 Query 66709 TACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA- 66767 ||| || || ||||| ||||| ||| |||| || | || |||| |||| | Sbjct 355305 TACTGGTGAACAGGCTCTGGAAATCTGTGACGCGCTGACCCGTTCAGGCG--CTGTTGAC 355362 Query 66768 -TCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 66826 | || |||||||||||||||| || ||| ||| || || |||||||||| || Sbjct 355363 GTGATCATCGTTGACTCCGTGGCTGCACTGACACCGAAAGCAGAAATCGAAGGCGAAATT 355422 Query 66827 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACT 66886 || ||| |||| | ||||| || || | ||| ||||| ||||| ||||| | Sbjct 355423 GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCC 355482 Query 66887 GGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 66946 || | | | | | ||||||| ||| ||| |||||||| | || ||| || Sbjct 355483 GGTAACCTGAAAAACGCCAACACACTGCTTATCTTCATCAACCAGATCCGTATGAAAATT 355542 Query 66947 GGCAACGTGGGCTACGG---CCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTC 67003 || ||| | ||| |||| || |||||||| ||||| || || ||| ||| Sbjct 355543 GGT---GTGATGTTCGGTAACCCG---GAAACCACCACCGGCGGTAACGCGCTGAAATTC 355596 Query 67004 TACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCT 67063 |||||||| || ||| ||||| ||||||| |||| | | || ||||| |||| || | Sbjct 355597 TACGCCTCTGTGCGTCTGGATATCCGTCGTATCGGCGCGATTAAAGAAGGTGATGTGGTT 355656 Query 67064 GTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAA 67101 ||||| | | || || ||||| || || |||||||| Sbjct 355657 GTCGGTAGCGAAACGCGTGTGAAAGTGGTGAAGAACAA 355694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242657060583756