Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq828 163 3e-35 seq785 159 4e-34 seq35 116 4e-21 seq9405 105 8e-18 >seq828 Length=218660 Score = 163 bits (180), Expect = 3e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 67742 ATTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTG 67801 |||||| |||||| || || || | || || ||||| ||||| ||||| | |||||||| Sbjct 42130 ATTACAGGCTTTCAGTGAAAGTACGGGTAATCACGTCACGCTGCTGTTCAGCAGTCAGTG 42189 Query 67802 CATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGAT 67861 || || || || || || || || || || || || | ||||||||| |||||||||| Sbjct 42190 AGTTGAAACGTACCGCATAGCCAGACACACGAATAGTCAGCTGTGGGTATTTCTCAGGAT 42249 Query 67862 GTTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCAC 67921 |||| || ||||||||||| ||||| ||||| || || || ||||| |||||||| |||| Sbjct 42250 GTTTAACCGCATCTTCCAGTGTTTCACGACGCAGTACGTTAACGTTCAGGTGCTGACCAC 42309 Query 67922 CTTCAACTTTAACAGTCGGTTGAAACTCAATATCAACTTCACG 67964 |||| || || ||||| |||| || || |||||||| Sbjct 42310 CTTCCACGCGCACGGTCGGCTGAACTTCCATTGGCACTTCACG 42352 >seq785 Length=396209 Score = 159 bits (176), Expect = 4e-34 Identities = 762/1193 (64%), Gaps = 76/1193 (6%) Strand=Plus/Plus Query 141211 GTTTCATGCAGTCCGATGTATCCCAGACTGATAGAGCTACGCCCATTTTTGAACAGTTCC 141270 |||||||||| || |||||||| || || ||| ||| ||||||||||| | | || Sbjct 142009 GTTTCATGCACGCCAATGTATCCGAGCGAAATCGAGGCACGGCCATTTTTGAAGA-TGCC 142067 Query 141271 AGAATT-TCATCATCAGGATTCAGACGGACACCAAATGCACCTTCTGTGTACAGGATAGG 141329 ||| | || || |||| ||||| || ||||| | |||||||| |||||||||| || Sbjct 142068 GGAAATATCGTCGTCAGCTTTCAGGCGCACACCGCACGCACCTTCCATGTACAGGATTGG 142127 Query 141330 CGCAACGCTGGCTTTAACACCACGTAGGCTATCAATTCGAGTCATCAGGGCTTCAAAACA 141389 ||| |||| |||||| | || || | |||| || |||||||| |||| Sbjct 142128 CGCCACGCGGGCTTTGATGCCTTCCAGACGTGCAATGCGGGTCATCAGCGCTTTCTTCGC 142187 Query 141390 CAAACCCAGACGATCATCAAGAATACGCCAAAAAGCCTCGT-GTGNNNNNNNNNNNNNNN 141448 || || ||| || || || | ||| || ||| | | || Sbjct 142188 CAGCAGCAAACGCTCGTCGAGCAGTGCCCAGAACGCCGCTTCGT----------CGCGGT 142237 Query 141449 NNNNNNNNAGAGCAATACGCGGGAGGTTAATTGTCACCACACCCAAGTTATTACGTCCAT 141508 || ||||||||||| || || | | | ||| || | ||||| || || | Sbjct 142238 TCGCTTCCAGCGCAATACGCGGCAGATTCAGGCTGATCACGCCGATATTATTGCGGCCCT 142297 Query 141509 CCAGAATTTCATTACCGTTATCATCATGCCACACACTAAGGAAACTGCGACAACCCATAG 141568 | | || | || || || |||| |||| | ||||||||||| || ||||| | Sbjct 142298 CGTGGATCATCTCGCCATTTTCTTCAT---ACACGCCCAGGAAACTGCGGCAGCCCATCG 142354 Query 141569 GAGATACAGGAACGCTAGAACCAGTGATAAGGCGGTTATTAGCCGAAC-TAAT----GAT 141623 | | | ||||| |||| |||| | | | | | || | |||| ||| Sbjct 142355 GCGTTTT--GAACG----AACCTGTGA-----CTTTCACCACCTGATCATAATTGAGGAT 142403 Query 141624 ATCTGGGTACATACGTTTCGAAGCGCATTCCAGAGCCAATTGTTTGATGTCATAGTTACG 141683 || ||||||||||| || ||||||||||| |||| ||| |||||||| ||||| Sbjct 142404 GTCCGGGTACATACGCTTGCTGGCGCATTCCAGTGCCAGTTGCTTGATGTCGTAGTTGGC 142463 Query 141684 ATCCCCAGGATTCATGTTT-ACACCTTTTTCCAT---AAACATGACCAGTTTAGGGAACA 141739 || || || || ||| || | || | || ||||| ||||||| ||||| | Sbjct 142464 GTCACC-GGCTTTATGATTCAGGCCGTCACGGATGGCAAACA---CCAGTTTTGGGAATA 142519 Query 141740 CAGGGGTAATACCTTGTTTACCCAGACCACGAATACGGTTTTTCAGAATCGCTTTCTGGA 141799 ||| ||| | | | ||| ||||| || ||| ||||| |||||| | || ||||| Sbjct 142520 CAGCGGTTTTGCGATTTTTGCCCAGTCCGGCAATGCGGTTACGCAGAATTGATTGCTGGA 142579 Query 141800 TCATTCGTTCAAACATTCCC-----GTACCAGTACCGAAAGTAATAGTAACGAAAGGTGT 141854 ||| || |||||| || || || ||| | || || || || || Sbjct 142580 TCAGGCGCG-----ATTCCCAGGATGTGCCGAGGCCAAAACCGAAGGTGACAAACGGCGT 142634 Query 141855 TTGTCCGTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGATTGGAAAGCATCA-A 141913 || |||||||| || |||||||| ||||| || ||||| ||| ||||| || ||| | Sbjct 142635 CTGGCCGTTGGCGGTGTGCAGCGTATTAACCTCATATTCCAGCGACTGGAAGGCGTCATA 142694 Query 141914 ACACATCTTTTTCAGT----CTTTTCCATCGCATATGTACGATCC--AAC-GAAATTTTA 141966 |||| |||||||| || || | ||| | | |||| | | | ||| | Sbjct 142695 ACAC-TCTTTTTCGGTACGGCTGTGA----GCAAAG---CCATCCGCATCTGCAATCTGC 142746 Query 141967 TACTTTTTAGCATCCTTAACATGCTTTTCATA--TGTCATTTCTGCATACGGAGCCAGCA 142024 ||| || ||| || | ||| || | | || | | | | ||| ||||| | Sbjct 142747 CACTCTTCGGCAGTCTGACGATGTTTATTGAAGCTGGCGGTGACGAA--CGGCGCCAGTA 142804 Query 142025 CTTTATCAA--CGTTTGCAAAGGTTGTCCCGCCGTACTGGTGAGAAGCAATCTGTGCGGT 142082 ||| || | || || || ||| || |||||||| || || | ||| ||| | Sbjct 142805 CTTCGTCGATGCGGTT--AATGGTCGTGCCGCCGTAAATATGGCTGGCGACCTGCGCGAT 142862 Query 142083 GATCTGTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGGTTCGATGTCTGCGTT 142142 ||||| || | | || || || || || || || | || || || || || Sbjct 142863 AATCTGCGCGGTGACGGCCGTTGCGGTGGAAATAGACTTTGGCGTGTCAATTTCCGCATT 142922 Query 142143 ACCCATCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAGACAGCAGTTTGTGTA 142202 |||||| ||||| || | | || ||| ||||| | || | ||| |||||| Sbjct 142923 ACCCATTTTGAAACCGTGATTCAACATGCCTTTAAGGTCGATCAGCATGCAGTTAAACAT 142982 Query 142203 TGGCGTGAACGGGCTGTAATCCAGATCATGATAGTGGATGTCGCCGGAGTCATGCGCTTC 142262 || ||||||| ||||| || |||||||| ||||| ||||| |||||||| Sbjct 142983 CGGGAAGAACGGGGAATAATCGAGGTCATGATAATGGATTTCGCCACGCTCATGCGCCAG 143042 Query 142263 TACGATATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCGCTACAATACCCGCCAG 142322 |||| || ||| | ||||| | |||| ||||||| || |||||||||||||| Sbjct 143043 CACGACATCACGCGGTAAAATATGCTGTTTGGCGTAATGCTTGGCGACAATACCCGCCAG 143102 Query 142323 CAAATCGCGCTGTGTCGGGAATACCCTTGC-GTCTTTGTTCGCGTTCTCGTTG 142374 || || ||||| |||||| || | |||| ||||||||| || ||||||||| Sbjct 143103 CAGGTCACGCTGGGTCGGG-ATCACTTTGCTGTCTTTGTTGGCATTCTCGTTG 143154 >seq35 Length=455554 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 78435 ATCACCACCTGTCCATACCAGATCACCAACTTCGTACCCGCAAATATCAGCGATAATATG 78494 ||| ||||| ||||| || | |||||| ||||| |||| | || || ||||| Sbjct 112742 ATCGCCACCCGTCCAGACAAAATCACCCACTTCAAGGTCGCATTGTTGCGCCATCATATG 112683 Query 78495 CGTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACG 78554 | ||| || |||||| |||||||||||||||||| || | ||||| ||| || || Sbjct 112682 CACCAGCAGTGCGTAGCTGGCGATATTGAACGGCAAGCCGAGGAAGATATCGCATGAGCG 112623 Query 78555 CTGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACA 78614 ||| ||| ||| |||| |||||||| | || ||||||||||||| ||| || Sbjct 112622 CTGGTACAGCTGGCAGGACAATTTACCGTCGGCCACATAGAACTGGAAGAAAGCGTGGCA 112563 Query 78615 CGGACGCAATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATGAT 78668 || || ||||| |||||||| || | ||||||||| || ||||| || Sbjct 112562 AGGTGCCAGCGCCATCTTATCCAGTTCGCCCACGTTCCATGCAGACACGATAAT 112509 >seq9405 Length=40329 Score = 105 bits (116), Expect = 8e-18 Identities = 272/407 (67%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 75996 GCACCGTCGCGGGTGTTGTGATAATACAGAGTTTTCACGCCGTAGTAGTTCGCATAAAGC 76055 ||||||||||||||||| ||||||||||| ||||| ||||| | | || || ||| Sbjct 35491 GCACCGTCGCGGGTGTTCTGATAATACAGCGTTTTGACGCCAAATTTGTAGGCTGTCAGC 35432 Query 76056 AGGTC-ATCAATGATGGTTTCAGATTTCACTTTACCATCTGGGAAGTTAGCCGGATCATA 76114 | ||| |||| | |||||| |||||||| | |||||| | ||| ||||| Sbjct 35431 AAGTCTTTCAACAACTGTTTCA-TCGGCACTTTACTGTTCGGGAAGCGCGACGGGTCATA 35373 Query 76115 GTTGGTGTTTGCAGAGATCGCTTGATCAACAAACTTCTGCATAACAGCAACATGAGACAG 76174 ||||||||| | || ||||| ||||| | || |||||||| || |||| | ||| Sbjct 35372 GTTGGTGTTGGACGAAATCGCCTGATCGATGAATTTCTGCATCACGCCAACCAGTTGCAG 35313 Query 76175 ATAACCTTTATTACCGCGTTTTGCCATTGTCCAGAGATAATCATAGAAATCAATCTGGTC 76234 ||| || | || || | ||| ||| || || || ||| || | | Sbjct 35312 ATAGCCGT------CGTTGTTCGGCATATCCCACAGCAGTTCGTACTGATCTTTC-AGAC 35260 Query 76235 GTTC-TGGTTCGGTACTACCTGGTTGAATGA-ACCTTCTTTCGAAGATTTCACACTCACA 76292 | || | | ||| || |||| | | | || || |||||||| | ||| | ||| | | Sbjct 35259 GCTCATACTCCGGCACGACCT-GACGCAGGATCCCGTCTTTCGACGCTTTAATACTGATA 35201 Query 76293 GGGCCGCGAGGCGGTTCAATCCCGTTTGTTGAGTTGCTTACTTGAGAACTACTCTCACAT 76352 ||||||| || || || || ||||| || | |||| | || ||| |||| | Sbjct 35200 TGGCCGCGCGGTGGCTCGATACCGTTGGTAGCGTTGGAGATCTGCGAAGAGGTCTCGGAC 35141 Query 76353 GGCATTAAAGCAGAAAGAGTTGAGTTACGCAAGCCATATTTTTTGAT 76399 ||||| | ||||| || || |||||||||| ||| | ||||||| Sbjct 35140 GGCATCAGCGCAGACAGCGTGGAGTTACGCAGGCCGTGCGTTTTGAT 35094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567984471102720