Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq725 273 8e-69 seq19589 118 4e-22 >seq725 Length=236385 Score = 273 bits (302), Expect = 8e-69 Identities = 473/681 (69%), Gaps = 10/681 (1%) Strand=Plus/Plus Query 644 GCTTCTTCTTTTTCCAGCCATCTCACGCGTTTGTTTTTTACGGCAGGTATTTTGATTACA 703 ||||| | | ||| |||||||| ||||| || |||||| | || | ||| || || Sbjct 173948 GCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTTGCCTGTGGGACTTTTATCACT 174007 Query 704 GGTGCTTTTTCAAGCCATTTCCAGTCTCGCTCTGCGGCGCGCAGAATAGCCTTGATCATT 763 || ||||| || ||||||||||| ||||| |||||||||||||| | | ||| |||| Sbjct 174008 GGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCGCGCAGCAGCGACTTCATCAGG 174067 Query 764 GCCAGGTGTGTTGCTTTTGTTTGCGTGCTCACCGATTTAGGTATATAGGCTGGTGGTTCT 823 || |||||| |||| || || ||||| ||| | | ||| ||| | ||| Sbjct 174068 GCGAGGTGTTTTGCCTTGGTGGCTGTGCTGACCTTCTGGCGCTCATACTTTGGCGCTTCG 174127 Query 824 TTCCCTTTTCTTAATGCAGC-CTCCACCTGCAACTTCCATC--TCTCCTTTGTTTTTCGG 880 ||||| | ||| || || |||||| | || | ||| || ||| Sbjct 174128 ATCCCTCT-CTTCGCCAAGGACTGTGAATGCAAC--CGATGGTTTTCCGCTGCCCGGCGG 174184 Query 881 TTATACGCTTTGCTGATAACTGAGTAGATCATTGCCTCCGATATATCCTTAATCCTTATT 940 ||| | ||||||||| | | |||||| | || || | |||||||| | | | | Sbjct 174185 TTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTCGGTAATATCCTTCAACTTCACC 174244 Query 941 CCCTCGAAATGCTCAATCCAGAATGCGATTCTGGATTTATCGGAATCGATGGATTTCTTG 1000 || || |||||| | ||||||| | || | | ||| || ||| | |||||||| Sbjct 174245 CCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTTGTCATCATCCAGAGATTTCTTC 174304 Query 1001 TCGGCTTTTTCCTCAAGCCATCTCAGGCAGGCTTCTTCGAAAGTGACATCTGGCATATCC 1060 || || ||| || | ||| || | ||||| ||||| |||||||| || || | ||| Sbjct 174305 TCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTCAAAAGTGACGTCAGGAAAATCG 174364 Query 1061 CCCAGTCTGTCTACTCGCCAGAGTTCTGCTTTTCGCTTGTCGTGCAACTCCTGAGCTTGC 1120 ||||| | ||||| ||||||||| |||| ||||| |||||||||| |||||| || | | Sbjct 174365 CCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTTGTCGTGCAGCTCCTGTGCCTCC 174424 Query 1121 CGCTTGTCCTTTGTGCCAAGAGACTCCTTAATTCGCTTCCCGCCCGGGAGCGAGTACGAG 1180 | ||||| | ||| |||||||| || |||| || | ||||||||| |||||| | Sbjct 174425 CTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTTGCCCGCCCGGCAGCGAGAAGCTC 174484 Query 1181 GCGTACCATATTTCACCTCTGCGGAAGAGTGACATTTTCTTTCCTCTGTTATGCCATCAC 1240 |||||||| || | |||||| ||||||| ||||| || ||||||| ||| |||| Sbjct 174485 GCGTACCAGATGTTACCTCTACGGAAGATAGACATGTTTTTTCCTCGAGCATG---TCAC 174541 Query 1241 CCGCGCTCACCTGGACAGTATGCAGCGGTGAATGAAGTGCTGCAATGCAGGCTTGCCGGG 1300 || | ||||| |||||| | | |||| || ||||| ||||| || |||||||||| Sbjct 174542 CCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAGTGCGGCAATACATGCTTGCCGGG 174601 Query 1301 TTGTGAGATAAGGTGATCTTT 1321 | || ||||| || |||| Sbjct 174602 TGAAGATGTAAGGGGA-CTTT 174621 Score = 163 bits (180), Expect = 1e-35 Identities = 153/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 85 GTGGGACAAATTTGGGACATCGTCACTCAATATGTCGTCAATTTTCCTCGCGTGCTCTGT 144 |||||||| |||||||||| | | || || |||| || | | |||||||||| || Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539 Query 145 CAAATGATTAGGTGCAAGGTGTGCGTACCTACGCACCATTTCGATAGACTCCCAGCCGCC 204 |||||||| || || || || ||||| | || ||||| ||||| |||||||||||||| Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599 Query 205 CATTTCCTGAAGTACTGACAGCGGTACACCTGACTGAATTAACCAACTGGCCCAAGTGTG 264 |||||||||||| ||||||| ||| ||||| | |||||| | ||| || ||||| ||||| Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659 Query 265 GCGGAGGTCATGAAA 279 | ||||| ||||| Sbjct 175660 TCTCAGGTCGTGAAA 175674 >seq19589 Length=24186 Score = 118 bits (130), Expect = 4e-22 Identities = 417/647 (64%), Gaps = 11/647 (2%) Strand=Plus/Plus Query 25360 TCAGTGGGCGGCAATAGGCGTGCTGGGGAGTCTGCTGTTTGGTCTGCTGACGTACCTGAC 25419 ||||||| || ||||| ||||||| || | | | | || || || |||||||| Sbjct 19002 TCAGTGGAACGCTATAGGTGTGCTGGCAGGTATATCGGTCGCGCTCCTCACATACCTGAC 19061 Query 25420 GAACCTGTATTTCAAGATTAAAGAAGACCGGCGTAAGGCGGCGCGGGGAGAGTAA--GCT 25477 ||| ||||||||||| || ||||||||||| || || || |||| || | | || Sbjct 19062 GAATCTGTATTTCAAAATCAAAGAAGACCGCCGCAAAGCACTCAGGGGTGAATGATGGCA 19121 Query 25478 GATGAGCAGGAAATTCCGCTATGGTTTATCAGCG--GTAGTTCTGGCGCTGATTGCCGCA 25535 | ||| || | || | | ||||| | || | || ||||| | Sbjct 19122 TCTCAGCCGGGAGTTAA---AAGCAAACTCAGCAAAGCTGTAATCGCTCTGATCATTTCT 19178 Query 25536 GGTGCTTCTGCGCCTGAAATCCTCGACCAGTTTCTGGATGAAAAGGAAGGTAACCACACC 25595 || ||| || | | ||||||| || ||||| ||||||||||||||||| Sbjct 19179 GGAGCTGGCGCATCGGCTATCCTCGGACAATTTCTTGATGAAAAGGAAGGTAATAGTCTG 19238 Query 25596 ACGGCATACCGTGATGGTGTGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGAT 25655 ||||| || | ||||| ||||| |||||||| || ||||| || | ||||| | ||| Sbjct 19239 ACGGCTTATCAGGATGGCGTGGGGATCTGGACAATTTGCCGCGGCGTTACCCGCATTGAT 19298 Query 25656 GGTAAGCCTGTGATTCCT--GGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACG 25713 || ||||| || | ||||||| || | || || |||| || ||| Sbjct 19299 GGGCGCCCTGT--TTACAAAGGCATGACATTGACTGCGGCGAAGTGCGCAGATGTGAACA 19356 Query 25714 CTATCGAACGGGATAAGGCGCTGGCATGGGTGGCGAAGAACATCAGAGTGCCACTGACTG 25773 | ||| |||||||| | | ||||| | || ||| || | |||||| Sbjct 19357 AATTGGAATCCAATAAGGCGATAGAGTGGGTTAAAACTAATGTCACTGTCACGCTGACTC 19416 Query 25774 AACCCCAGAAAGCGGGTATTGCGTCATTCTGTCCTTACAACATTGGCCCCGGTAAGTGTT 25833 | || || | || ||||| || ||||| || || ||||||||||| || | || || | Sbjct 19417 AGCCGCAAATTGCCGGTATCGCATCATTTTGCCCCTACAACATTGGACCGGCGAAATGCT 19476 Query 25834 TCCCGTCGACGTTTTATAAACGAATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCGA 25893 || | || ||||| || ||| | | ||||| || ||| | |||||||| | | | Sbjct 19477 TCACTTCAACGTTCTACAAAAAACTAAATGCCGGAGATAAACGTGGTGCCTGTGCTGAAA 19536 Query 25894 TTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGCTCAAATAATTGCTACG 25953 | ||||| | || | ||| | ||||||| | ||| ||||||||||| | Sbjct 19537 TAAAGCGGTGGGTACGCGATGATGGGAAAGACTGCAATGCCCGGGAAAATAATTGCTTTG 19596 Query 25954 GTCAGGTATCAAGACGTGACCAGGAGAGTGCGCTGTCATGCTGGGGT 26000 | ||||| | | ||||| ||||| || | || ||||||||||| Sbjct 19597 GGCAGGTGATACGCCGTGATCAGGAAAGCGAACTAACATGCTGGGGT 19643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194519269145796