Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4062 196 1e-44 seq48539 170 4e-37 seq8521 170 4e-37 seq8056 145 2e-29 >seq4062 Length=67394 Score = 196 bits (216), Expect = 1e-44 Identities = 176/221 (80%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| || || || ||||| || |||||||| || |||||||| || |||| ||| ||| Sbjct 48384 CGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTC 48325 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||||||||||||||| |||||||| || | || ||||| || || | |||| Sbjct 48324 CTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCT 48265 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || |||||||| || || | ||||||||||||||| || |||||||| Sbjct 48264 TCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGG 48205 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 48204 GTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 48164 >seq48539 Length=7100 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || || ||||||||||| || || || | |||||| | |||||| Sbjct 6698 AGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCC 6639 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| ||||||||||| | | || || || ||||| | |||||||||||| Sbjct 6638 TCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCT 6579 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 6578 TGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTC 6519 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || |||||||| || | |||||| Sbjct 6518 TTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||| ||||| ||||| || |||| |||||| | ||||||| Sbjct 6926 AGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCT 6867 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| ||||| ||||| | | || || || || |||| |||||||||||| Sbjct 6866 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCT 6807 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || ||||| ||||| || ||| |||||| || | ||||| || Sbjct 6806 TGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTT 6747 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| ||||| | ||||||| Sbjct 6746 TTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| || |||||||| || ||||| | ||||| | || ||| Sbjct 6470 AGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCT 6411 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| || || | || || || ||||| | ||||| ||||| Sbjct 6410 TCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCT 6351 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || ||| ||||||||||| || || || || || ||||| | ||| |||||| Sbjct 6350 TGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTC 6291 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | || || || || | |||||| || Sbjct 6290 TTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256 Score = 107 bits (118), Expect = 4e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| || ||||| || || ||||| | | || || || || |||| |||||| Sbjct 7100 CCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCC 7041 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| |||||||| ||| || ||||| ||||| || ||| ||||||||||| || Sbjct 7040 TTGTCTTGGATCTTGGCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGTGTT 6981 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || |||||||| || || | |||||| Sbjct 6980 ATGGTTTTACCAGTCAGAGTCTTGACGAAGATTTGCATT 6942 >seq8521 Length=40141 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||||||||||||| || || |||||||| || | ||||| | ||||||| Sbjct 2230 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCT 2171 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | | || || || || || | |||||||| ||| Sbjct 2170 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2111 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || ||||||||| |||||||| || ||||| ||| Sbjct 2110 TGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTC 2051 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 2050 TTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || |||||||| |||||||| || || | |||||| | ||||||| Sbjct 2686 AGGACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCT 2627 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | | || || || || |||| ||||||||||| Sbjct 2626 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCT 2567 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| ||| ||||||||||| ||||| ||| Sbjct 2566 TGGATCTTGGCCTTAACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTC 2507 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 2506 TTCCCAGTCAGAGTCTTGACGAAGATCTGCAT 2475 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || ||||||||||||||||| || || | |||||| | ||||||| Sbjct 2914 AGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCT 2855 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| ||||| ||||| | | || || || || || | |||||||| ||| Sbjct 2854 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2795 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || || ||||| ||| |||||||| || ||||| ||| Sbjct 2794 TGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTC 2735 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | |||||| Sbjct 2734 TTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||||||||| || || |||||||| || |||||||| || || | || || Sbjct 2468 ACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGT 2409 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || || ||||| | | || || || || || | || Sbjct 2408 GCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACC 2349 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||| || || || || || || |||| ||| ||||||||| || Sbjct 2348 TTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACCTCCAG 2289 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | |||||| ||||| | |||||| Sbjct 2288 TGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247 Score = 93.3 bits (102), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| || || || || || ||||| || || | ||||| | |||||| Sbjct 2002 AGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTACGACCATCT 1943 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| | | || || || || |||| ||||||||||| Sbjct 1942 TCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCT 1883 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGT 211051 |||||||| ||| || ||||| ||||| Sbjct 1882 TGGATCTTGGCTTTAACATTTTCAATGGT 1854 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || || || || |||| ||||||||||| |||||||| ||| || ||||| ||||| Sbjct 3052 TGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTTTCAATGGTA 2993 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| ||||||||||| || || ||||| || || || ||||| || || | |||| Sbjct 2992 TCTGAGGGCTCAACCTCGAGTGTTATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGC 2933 Query 211113 ATT 211115 ||| Sbjct 2932 ATT 2930 >seq8056 Length=34938 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || ||||| || ||||| | |||||| | |||||||| | || Sbjct 32105 TGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCTAATTGT 32046 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||||||||| |||||||| || ||||||| |||||| ||||| || || || Sbjct 32045 TTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGAATTTTC 31986 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || |||||||| || || ||| |||||||| | |||||||||||||| || Sbjct 31985 GCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTTCCGGTC 31926 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || || || | |||||| Sbjct 31925 AAAGTTTTCACGAAAATCTGCAT 31903 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || || ||||| || ||||| || || | ||||| | |||||||||| Sbjct 32339 ACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTACGTCCATCTTCC 32280 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||||||||| ||||| || | | || || || || || | |||||||| || || Sbjct 32279 AGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGA 32220 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || || |||||||| || || || ||| ||| ||||| || ||||| ||||| Sbjct 32219 ATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGACCTCCAGGGTGATTGTCTTG 32160 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| || || | |||||| Sbjct 32159 CCAGTTAATGTCTTGACGAAGATCTGCAT 32131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158129702556410