Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq15643 123 2e-23
seq8056 113 3e-20
seq48539 111 1e-19
seq8521 111 1e-19
seq4062 87.8 1e-12
>seq15643
Length=27379
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||||| ||||| ||||| ||||| || || || || || |
Sbjct 12046 AATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCCTC 12105
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | |||| | ||| || || ||||||||||| | || ||||||||
Sbjct 12106 TGACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCTCCAGATCA 12165
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || ||||| ||||| || || || | ||| || | ||||||||
Sbjct 12166 GCAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTACAA 12225
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || ||||||||| | || ||||| | | | ||||||||
Sbjct 12226 TATCCAGAAGGAGTCCACACTTCACTTAGTGCTTCGACTCCGAGGAGG 12273
>seq8056
Length=34938
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| ||||| | || ||||| |||||||| | || ||||| || |
Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | |||| |||| |||||| ||||||||||| | || || ||||||
Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 32022
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || || || || |||||| | ||||| | ||||| | |||||||||
Sbjct 32023 CAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAAT 32082
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || ||||| || | ||||| || | | | ||||||||
Sbjct 32083 ATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGG 32129
>seq48539
Length=7100
Score = 111 bits (122), Expect = 1e-19
Identities = 148/201 (74%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| || || ||||| || || ||||| ||||| | |||||||| || |
Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773
Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || ||| |||| |||| | || ||| ||||| ||||| | || |||||||
Sbjct 6774 AGATACCATTGAAAATGTTAAGGC-TAAGATTCAAGACAAGGAAGGAATTCCCCCAGATC 6832
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTA 23786
| ||| | || || ||||| || || ||| ||||||| | ||| | |||| | || ||
Sbjct 6833 AGCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCG--GACTA 6890
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| ||||| ||||| ||
Sbjct 6891 CAACATTCAAAAGGAGTCAAC 6911
Score = 109 bits (120), Expect = 4e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| |||||| | || || || ||||| ||| | || || || |
Sbjct 6256 AACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCT 6315
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || |||||| | || ||||||| |||||||||||| | || ||||||
Sbjct 6316 TCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGAT 6375
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || || || ||||| || ||||||||| || || | |||||||
Sbjct 6376 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTAC 6435
Query 23788 AACATACAAAAAGAGTCCAC 23807
|| || ||||| || |||||
Sbjct 6436 AATATCCAAAAGGAATCCAC 6455
>seq8521
Length=40141
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || |||||||| || || || || ||||| || || ||||| || |
Sbjct 2703 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACCATCACCCTAGAGGTTGAGCCCTCA 2762
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | || || |||||| | || ||||||||
Sbjct 2763 GACACAATTGAGAATGTGAAAGCCAAGA-TCCAGGATAAGGAAGGTATCCCCCCAGATCA 2821
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||| || || ||| ||||||| | ||| || | ||| |||||
Sbjct 2822 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCCGACTACAA 2881
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||||||||| ||
Sbjct 2882 CATCCAAAAAGAGTCGAC 2899
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || || || || ||||| || || ||||| || |
Sbjct 2019 ATGCAGATTTTCGTGAAGACCCTTACCGGCAAGACAATCACCCTAGAGGTTGAGCCCTCT 2078
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || || || || |||||| | || ||||||||
Sbjct 2079 GACACAATTGAGAATGTGAAAGC-CAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCA 2137
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || ||||| || || |||||||| | ||| || | || || ||
Sbjct 2138 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTCTCTGACTATAA 2197
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 2198 CATTCAGAAGGAGTCCAC 2215
>seq4062
Length=67394
Score = 87.8 bits (96), Expect = 1e-12
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| ||||| || || | |
Sbjct 48164 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGCCTTCT 48223
Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | ||| || | || | || || || || ||||| | || ||||| ||
Sbjct 48224 GACACCATCGAACATGTCAAGGC-CAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCA 48282
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTAC 23787
||| | | || || |||||||| || |||||||| | | |||||| | || |||
Sbjct 48283 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCG--GACTAC 48340
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || ||||||||
Sbjct 48341 AACATCCAGAAGGAGTCCAC 48360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337726038887672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |