Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq8056 159 8e-34
seq4062 156 1e-32
seq48539 149 1e-30
seq8521 134 3e-26
seq15643 107 5e-18
seq15628 84.2 5e-11
>seq8056
Length=34938
Score = 159 bits (176), Expect = 8e-34
Identities = 157/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
||||| || || || || |||| ||||||||||| | || | |||||||||| ||
Sbjct 32105 TGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTCTAATTGT 32046
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| |||||||||||||| |||||||| || || ||||| ||||| |||||||| || ||
Sbjct 32045 TTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTGAATTTTC 31986
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| |||||| || ||||||| || || || || ||||||||||| || |||
Sbjct 31985 GCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTTTCCGGTC 31926
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|||||||| | ||| | |||||
Sbjct 31925 AAAGTTTTCACGAAAATCTGCAT 31903
>seq4062
Length=67394
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| ||||| || |||||||| ||||| || || |||| ||||| || | | ||
Sbjct 48384 CGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTC 48325
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| |||||||| |||||||| || |||||||| || | || ||||| || || || |||
Sbjct 48324 CTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCT 48265
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||| ||||||||||| ||| ||| |||||||||||| || | ||||| || |
Sbjct 48264 TCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGG 48205
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||||||||| | || || | ||| | |||||
Sbjct 48204 GTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 48164
>seq48539
Length=7100
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | |||||| |||||||| ||||||| ||||||||||| | |||| || |||
Sbjct 6470 AGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCT 6411
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || || | || || || || || |||||||| ||||||
Sbjct 6410 TCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCT 6351
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || ||| |||||| ||| || || || || | ||||| || || || ||||||
Sbjct 6350 TGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTC 6291
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||| ||||| | ||| | ||||| ||
Sbjct 6290 TTGCCAGTCAAGGTTTTCACGAAAATCTGCATGTT 6256
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| || || ||||||||||||| |||||| |||| | || | |||||
Sbjct 6698 AGGACCAAGTGAAGGGTAGATTCTTTTTGGATATTGTAGTCGGAAAGGGTGCGTCCATCC 6639
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| || |||||||| | | || || || || || || ||||||||||||
Sbjct 6638 TCCAACTGCTTTCCTGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCT 6579
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| || ||| ||| || ||||| || | || || |||| || || |||
Sbjct 6578 TGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCTAGAGTAATAGTC 6519
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || |||| ||| | |||||
Sbjct 6518 TTTCCGGTAAGGGTCTTTACGAAGATCTGCAT 6487
Score = 107 bits (118), Expect = 5e-18
Identities = 119/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615
|||||||| || ||||| ||||| ||||| | | || || || || ||||||||||||
Sbjct 7100 CCATCTTCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCC 7041
Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675
|||||||||||||| || ||| ||| ||||| ||||||| || || || | ||
Sbjct 7040 TTGTCTTGGATCTTGGCTTTAACATTTTCAATGGTATCTGAGGGCTCAACCTCGAGTGTT 6981
Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || || || |||| ||| || | ||| | |||||||
Sbjct 6980 ATGGTTTTACCAGTCAGAGTCTTGACGAAGATTTGCATT 6942
Score = 105 bits (116), Expect = 2e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| || || || || ||||| | ||||| || | | || | ||||||
Sbjct 6926 AGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCT 6867
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | ||||| || || ||||| | | || || || || ||||| ||||||||||||
Sbjct 6866 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCT 6807
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| ||| ||||| ||||||| ||| || || || ||||| ||
Sbjct 6806 TGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTT 6747
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 6746 TTGCCAGT 6739
>seq8521
Length=40141
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || ||||| || || ||||| |||| ||||| || | | || | ||||||
Sbjct 2686 AGGACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCT 2627
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | | || || || || ||||||||||||||||||
Sbjct 2626 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCT 2567
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| || |||||||| |||| || || || | ||||| |||
Sbjct 2566 TGGATCTTGGCCTTAACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTC 2507
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||| ||| || | ||| | |||||
Sbjct 2506 TTCCCAGTCAGAGTCTTGACGAAGATCTGCAT 2475
Score = 125 bits (138), Expect = 2e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| ||||| ||||| || || |||| ||||| |||| | ||| | ||||||
Sbjct 2458 AGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCT 2399
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| | | || || || || || ||||||||||||||
Sbjct 2398 TCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGTCC 2339
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
||||| || ||| ||| || || |||| |||| ||| || || | || || |||
Sbjct 2338 TGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGGTC 2279
Query 225682 TTGCCCGTCAAAGTTTT 225698
||||| |||||||| ||
Sbjct 2278 TTGCCGGTCAAAGTCTT 2262
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| || || || |||||||||| ||||| |||| | || | ||||||
Sbjct 2914 AGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCT 2855
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | ||||| || || ||||| | | || || || || || ||||||||||| ||
Sbjct 2854 TCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2795
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| || || |||||||||| || || |||| ||||| |||
Sbjct 2794 TGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTC 2735
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||| |||||
Sbjct 2734 TTCCCGGTCAGGGTTTT 2718
Score = 107 bits (118), Expect = 5e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| |||||||| || || || | || || || | | || | ||||||
Sbjct 2230 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCT 2171
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | | || || || || || ||||||||||| ||
Sbjct 2170 TCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 2111
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| || || ||||| |||| || || |||| ||||| |||
Sbjct 2110 TGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTC 2051
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 2050 TTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019
Score = 89.7 bits (98), Expect = 1e-12
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| | ||| || || ||||| || || | ||||| || | | || | ||||||
Sbjct 2002 AGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTACGACCATCT 1943
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| ||||| ||||| | | || || || || ||||||||||||||||||
Sbjct 1942 TCAAGTTGCTTACCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCT 1883
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGT 225650
|||||||| || ||| ||| |||||
Sbjct 1882 TGGATCTTGGCTTTAACATTTTCAATGGT 1854
>seq15643
Length=27379
Score = 107 bits (118), Expect = 5e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| || || | ||| || ||||| || || |||| ||||||||| | | ||
Sbjct 12267 CGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATCTGAAAGGGTA 12208
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || ||||| || || |||||||| | | || || || || || || |||
Sbjct 12207 CGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGGATTCCT 12148
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| |||||||||||||| || ||| |||||| ||||| |||| || || || |
Sbjct 12147 TCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCTACCTCAAGG 12088
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || ||||| | || || | ||| | ||||||
Sbjct 12087 GTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATT 12046
>seq15628
Length=15187
Score = 84.2 bits (92), Expect = 5e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || || ||||||||||| |||||||||||||| | |||||||| || || |||||
Sbjct 7988 TTCTGGGTGTCCAAAAAATCAAAATAAATGTTGATATAAAATAGGATCTCCCCCTCCTGA 7929
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767
|| |||||||| ||| || | ||||| ||| ||
Sbjct 7928 AGGGTCAAAAAAAGAAGTGTTTAGATTTCGATCTGT 7893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191479464250796
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |