Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq35 401 4e-107 >seq35 Length=455554 Score = 401 bits (444), Expect = 4e-107 Identities = 664/958 (69%), Gaps = 18/958 (2%) Strand=Plus/Minus Query 78213 TCACCAAGGCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATC 78272 ||| ||| ||||||||||||||||| || ||||| ||| | |||||| | | Sbjct 13190 TCAGCAAAGCCATCAACTGGAACAAAATCCAGGACGATAAAGACCTCGAAGTGTGGAACC 13131 Query 78273 GACTCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCT 78332 | || || || |||||| |||| || ||||| ||| |||| ||||| || || || | Sbjct 13130 GCCTGACGTCGAATTTCTGGCTGCCGGAAAAGGTGCCGTTGTCGAACGATATTCCGTCGT 13071 Query 78333 GGGACACCCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCC 78392 ||| || || | || | || || |||| || || || || || |||||||| || | Sbjct 13070 GGGCGACGCTCAGCGCGCAGGAAAAACAACTGACGATCCGCGTATTTACCGGCCTGACGC 13011 Query 78393 TGCTCGACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCC 78452 |||| || ||| | || | || ||||| |||| || || || || | Sbjct 13010 TGCTGGATACCGTGCAAAACGTGGTCGGCGCACCGACGCTGATGAAAGATGCGGTGACGC 12951 Query 78453 CGCACGAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCT 78512 | ||||| || ||||| | | || ||| || ||||| |||| || || || | Sbjct 12950 CACACGAAGAAGCGGTTTACTCGAATATCTGCTTTATGGAAGCGGTGCATGCGCGTTCTT 12891 Query 78513 ACAGCTCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGT 78572 | || || || ||||| ||||| ||| || || | | | || || || | ||| ||| Sbjct 12890 ATAGTTCAATTTTCTCGACGCTGTGCGCCACCGTGGACGTGGATGAAGCCTACCGCTGGA 12831 Query 78573 CGGAGGAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCG 78632 ||||| |||| ||||| || || |||| | || || ||| ||||| Sbjct 12830 GCGAGGAAAACGTCGCGCTGCAAAATAAAGCGGCGATCATTTTGTCGTATTACGACGGCG 12771 Query 78633 ACGACCCCTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGG 78692 | || || ||| | ||| || ||||| | |||| ||| ||||| |||||||| | Sbjct 12770 AAGATCCGCTGATGAAGAAAGTCGCCAGCGTGTTCCTTGAGTCGTTCCTGTTCTACTCCG 12711 Query 78693 GCTTCTACCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGA 78752 | || || |||||||||||||||||||||||||||||||| || ||||||||||| ||| Sbjct 12710 GTTTTTATCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTCACCAACACCGCGGATCTGA 12651 Query 78753 TCCGGTTGATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGC 78812 |||| |||| ||||| |||||||| ||||| || ||||||||||| || || | |||| Sbjct 12650 TCCGTCTGATCATCCGTGACGAAGCGGTTCACGGTTACTACATCGGCTATAAATTCCAGA 12591 Query 78813 GAGGCCTCGAGACCCAGG---GGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCG 78869 || || | | | || | | ||| ||| | || |||||||| | |||| | Sbjct 12590 AAGCGCT---GGCACTGGAAAGCGAAGAGCGTCAGCGTCAGATCAAGGAGCAGGCGTTTG 12534 Query 78870 ATCTGCTCTCGGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACG 78929 ||||| | ||| | |||||||||||| ||||||||| | || ||||||| | Sbjct 12533 ATCTGATTCAGGATTTGTACGACAACGAGATCCGCTACACCGAAGAACTGTATGACGGTG 12474 Query 78930 TCGGACTCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGA 78989 | || | ||| || || ||||| ||||||| ||||||| |||||| |||||||||| Sbjct 12473 TAGGCTGGAGCGAAGACGTGAAGAAATTCCTGCATTACAACGCCAACAAAGCGCTGATGA 12414 Query 78990 ACCTCGGCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAG------ACCCGGCCA 79043 | |||||||||||||| |||||||| || | |||||| | | ||||| | Sbjct 12413 ATCTCGGCTACGAAGCCCTGTTCCC------AGCCAGCATGGCGGATGTGAATCCGGCGA 12360 Query 79044 TCATGTCCGCGCTCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCT 79103 || | ||||| | || ||| || |||||| |||||||||||||||||||| || || | Sbjct 12359 TCCTCTCCGCATTATCGCCAAACGCCGACGAAAACCACGACTTCTTCTCCGGATCCGGAT 12300 Query 79104 CGAGCTACGTCATCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGATG 79161 | || || ||||||||||| | || | ||| ||||||||||| |||||||| Sbjct 12299 CCTCGTATGTGATCGGCAAAGCCGTCAATACCGAAGACGAGGACTGGGATTTCTGATG 12242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299070494807012